Gm40778 Gene Detail

Summary

• Symbol
  Gm40778
• Name
  predicted gene, 40778

• Feature Type
  lncRNA gene
• IDs
  MGI:5623663
  NCBI Gene: 105245303
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:119245784-119247127 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623663	lncRNA gene	Chr10:119235035-119247726 (-)
129S1/SvImJ	ENSMUSG00200026741	unclassified gene	Chr10:115596435-115597778 (-)
A/J	ENSMUSG00195022051	unclassified gene	Chr10:115998094-115999434 (-)
AKR/J	ENSMUSG00220014848	unclassified gene	Chr10:115625574-115626916 (-)
BALB/cJ	ENSMUSG00180016923	unclassified gene	Chr10:116010719-116012059 (-)
C3H/HeJ	ENSMUSG00175024988	unclassified gene	Chr10:116013922-116015265 (-)
C57BL/6NJ	ENSMUSG00215021711	unclassified gene	Chr10:115655303-115656646 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032297	unclassified gene	Chr10:114982116-114983459 (-)
CBA/J	ENSMUSG00210021606	unclassified gene	Chr10:115850782-115852125 (-)
DBA/2J	ENSMUSG00185009236	unclassified gene	Chr10:115962131-115963471 (-)
FVB/NJ	ENSMUSG00205030979	unclassified gene	Chr10:115261162-115262502 (-)
JF1/MsJ	ENSUMUG00000020089	unclassified gene	Chr10:117234454-117235798 (-)
LP/J	ENSMUSG00230025269	unclassified gene	Chr10:117924609-117925949 (-)
NOD/ShiLtJ	ENSMUSG00190018559	unclassified gene	Chr10:116064047-116065387 (-)
NZO/HlLtJ	ENSMUSG00225018996	unclassified gene	Chr10:122168890-122170233 (-)
PWK/PhJ	ENSLUMG00010014272	unclassified gene	Chr10:115634253-115635599 (-)
SPRET/EiJ	ENSMSPG00010016276	unclassified gene	Chr10:117568806-117570140 (-)
WSB/EiJ	ENSIUOG00005013861	unclassified gene	Chr10:115680315-115681658 (-)

Homology

• Gene Tree
  Gm40778
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40778
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000111972 (Evidence)
• NCBI Gene
  105245303

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111972	Ensembl Gene Model | MGI Sequence Detail	1344	C57BL/6J
transcript	XR_872101	RefSeq | MGI Sequence Detail	1147	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87