Gm40741 Gene Detail

Summary

• Symbol
  Gm40741
• Name
  predicted gene, 40741

• Feature Type
  lncRNA gene
• IDs
  MGI:5623626
  NCBI Gene: 105245263
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:92979139-92981334 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623626	lncRNA gene	Chr10:92979063-92983879 (+)
129S1/SvImJ	ENSMUSG00200031076	lncRNA gene	Chr10:89484363-89486030 (+)
A/J	ENSMUSG00195023152	lncRNA gene	Chr10:89927543-89929198 (+)
AKR/J	ENSMUSG00220023397	lncRNA gene	Chr10:89495117-89496771 (+)
BALB/cJ	ENSMUSG00180036181	lncRNA gene	Chr10:89930297-89931952 (+)
C3H/HeJ	ENSMUSG00175023921	lncRNA gene	Chr10:89826267-89827922 (+)
C57BL/6NJ	ENSMUSG00215032640	lncRNA gene	Chr10:89507347-89508997 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038087	lncRNA gene	Chr10:89208766-89210414 (+)
CBA/J	ENSMUSG00210037181	lncRNA gene	Chr10:89666258-89667913 (+)
DBA/2J	ENSMUSG00185044298	lncRNA gene	Chr10:89877936-89879590 (+)
FVB/NJ	ENSMUSG00205024432	lncRNA gene	Chr10:89581901-89583556 (+)
JF1/MsJ	ENSUMUG00000029867	lncRNA gene	Chr10:91288011-91289663 (+)
LP/J	ENSMUSG00230023191	lncRNA gene	Chr10:91779978-91781644 (+)
NOD/ShiLtJ	ENSMUSG00190019651	lncRNA gene	Chr10:89915536-89917190 (+)
NZO/HlLtJ	ENSMUSG00225022492	lncRNA gene	Chr10:96030712-96032378 (+)
PWK/PhJ	ENSLUMG00010024314	lncRNA gene	Chr10:89554708-89556355 (+)
SPRET/EiJ	ENSMSPG00010010581	lncRNA gene	Chr10:91171049-91172689 (+)
WSB/EiJ	ENSIUOG00005039968	lncRNA gene	Chr10:89615513-89617174 (+)

Homology

• Gene Tree
  Gm40741
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transposon induced
  1
• Genomic Mutations
  2 involving Gm40741
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120466 (Evidence)
• NCBI Gene
  105245263

Representative Sequences			Length	Strain/Species
genomic	105245263	NCBI Gene Model | MGI Sequence Detail	2196	C57BL/6J
transcript	XR_871952	RefSeq | MGI Sequence Detail	726	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm40741:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95243	Chr10:92979699-92979713 (+)	567 bp
Tssr95244	Chr10:92981204-92981215 (+)	2,071 bp