Gm40709 Gene Detail

Summary

• Symbol
  Gm40709
• Name
  predicted gene, 40709

• Feature Type
  lncRNA gene
• IDs
  MGI:5623594
  NCBI Gene: 105245225
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:78188464-78191474 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623594	lncRNA gene	Chr10:78188260-78191552 (+)
129S1/SvImJ	ENSMUSG00200050317	lncRNA gene	Chr10:74866420-74869655 (+)
A/J	ENSMUSG00195051129	lncRNA gene	Chr10:75203094-75206329 (+)
AKR/J	ENSMUSG00220050076	lncRNA gene	Chr10:74862776-74866011 (+)
BALB/cJ	ENSMUSG00180053061	lncRNA gene	Chr10:75217471-75220706 (+)
C3H/HeJ	ENSMUSG00175052389	lncRNA gene	Chr10:75088571-75091804 (+)
C57BL/6NJ	ENSMUSG00215052907	lncRNA gene	Chr10:74826337-74829574 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051777	lncRNA gene	Chr10:74702390-74705583 (+)
CBA/J	ENSMUSG00210050411	lncRNA gene	Chr10:74944697-74947926 (+)
DBA/2J	ENSMUSG00185054325	lncRNA gene	Chr10:75287051-75290288 (+)
FVB/NJ	ENSMUSG00205051782	lncRNA gene	Chr10:74979081-74982312 (+)
JF1/MsJ	ENSUMUG00000056227	lncRNA gene	Chr10:76447143-76450386 (+)
LP/J	ENSMUSG00230051257	lncRNA gene	Chr10:77056528-77059766 (+)
NOD/ShiLtJ	ENSMUSG00190053017	lncRNA gene	Chr10:75264481-75267717 (+)
NZO/HlLtJ	ENSMUSG00225048188	lncRNA gene	Chr10:81344288-81347514 (+)
PWK/PhJ	ENSLUMG00010052296	lncRNA gene	Chr10:74831490-74834718 (+)
SPRET/EiJ	ENSMSPG00010047590	lncRNA gene	Chr10:76613327-76616521 (+)
WSB/EiJ	ENSIUOG00005051432	lncRNA gene	Chr10:74864196-74867398 (+)

Homology

• Gene Tree
  Gm40709
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  90
• Chemically induced (other)
  1
• Gene trapped
  89
• Genomic Mutations
  1 involving Gm40709
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  4

• Ensembl
  ENSMUSG00000112641 (Evidence)
• NCBI Gene
  105245225

Representative Sequences			Length	Strain/Species
genomic	105245225	NCBI Gene Model | MGI Sequence Detail	3011	C57BL/6J
transcript	XR_871854	RefSeq | MGI Sequence Detail	1019	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm40709:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94323	Chr10:78188356-78188370 (+)	-101 bp
Tssr94324	Chr10:78188377-78188382 (+)	-84 bp
Tssr94325	Chr10:78188396-78188402 (+)	-65 bp