Gm40692 Gene Detail

Summary

• Symbol
  Gm40692
• Name
  predicted gene, 40692

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5623577
  NCBI Gene: 105245207
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:74870177-74870859 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623577	lncRNA gene	Chr10:74859033-74870859 (+)
129S1/SvImJ	ENSMUSG00200017716	pseudogene	Chr10:71571200-71571882 (+)
A/J	ENSMUSG00195005700	pseudogene	Chr10:71883257-71883939 (+)
AKR/J	ENSMUSG00220029360	pseudogene	Chr10:71543018-71543700 (+)
BALB/cJ	ENSMUSG00180007926	pseudogene	Chr10:71897753-71898435 (+)
C3H/HeJ	ENSMUSG00175012694	pseudogene	Chr10:71769099-71769781 (+)
C57BL/6NJ	ENSMUSG00215004092	pseudogene	Chr10:71506670-71507352 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027635	pseudogene	Chr10:71375824-71376536 (+)
CBA/J	ENSMUSG00210009762	pseudogene	Chr10:71625282-71625964 (+)
DBA/2J	ENSMUSG00185021178	pseudogene	Chr10:71967643-71968325 (+)
FVB/NJ	ENSMUSG00205007556	pseudogene	Chr10:71661361-71662043 (+)
JF1/MsJ	ENSUMUG00000056363	pseudogene	Chr10:73104080-73104848 (+)
LP/J	ENSMUSG00230051368	pseudogene	Chr10:73737250-73737932 (+)
NOD/ShiLtJ	ENSMUSG00190008104	pseudogene	Chr10:71939310-71939993 (+)
NZO/HlLtJ	ENSMUSG00225048557	pseudogene	Chr10:78033737-78034419 (+)
PWK/PhJ	ENSLUMG00010007988	pseudogene	Chr10:71501945-71502688 (+)
SPRET/EiJ	ENSMSPG00010048098	pseudogene	Chr10:73288682-73289336 (+)
WSB/EiJ	ENSIUOG00005034511	pseudogene	Chr10:71522528-71523211 (+)

Homology

• Gene Tree
  Gm40692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40692
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000112136 (Evidence)
• NCBI Gene
  105245207

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112136	Ensembl Gene Model | MGI Sequence Detail	683	C57BL/6J
transcript	ENSMUST00000220411	Ensembl | MGI Sequence Detail	491	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87