Gm40685 Gene Detail

Summary

• Symbol
  Gm40685
• Name
  predicted gene, 40685

• Feature Type
  lncRNA gene
• IDs
  MGI:5623570
  NCBI Gene: 105245199
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:69147897-69151260 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623570	lncRNA gene	Chr10:69131886-69151262 (+)
129S1/SvImJ	ENSMUSG00200017928	lncRNA gene	Chr10:65829945-65833184 (+)
A/J	ENSMUSG00195006183	lncRNA gene	Chr10:66139506-66142744 (+)
AKR/J	ENSMUSG00220030051	lncRNA gene	Chr10:65808267-65811504 (+)
BALB/cJ	ENSMUSG00180008063	lncRNA gene	Chr10:66173932-66177170 (+)
C3H/HeJ	ENSMUSG00175013045	lncRNA gene	Chr10:66025967-66029208 (+)
C57BL/6NJ	ENSMUSG00215004151	lncRNA gene	Chr10:65783424-65786661 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027770	lncRNA gene	Chr10:65731876-65735054 (+)
CBA/J	ENSMUSG00210010028	lncRNA gene	Chr10:65900535-65903775 (+)
DBA/2J	ENSMUSG00185021261	lncRNA gene	Chr10:66243908-66247149 (+)
FVB/NJ	ENSMUSG00205008005	lncRNA gene	Chr10:65986403-65989640 (+)
JF1/MsJ	ENSUMUG00000025049	lncRNA gene	Chr10:67433024-67436266 (+)
LP/J	ENSMUSG00230020257	lncRNA gene	Chr10:68014705-68017942 (+)
NOD/ShiLtJ	ENSMUSG00190008053	lncRNA gene	Chr10:66243168-66246400 (+)
NZO/HlLtJ	ENSMUSG00225047796	lncRNA gene	Chr10:72292795-72296033 (+)
PWK/PhJ	ENSLUMG00010008158	lncRNA gene	Chr10:65823842-65827067 (+)
SPRET/EiJ	ENSMSPG00010023777	lncRNA gene	Chr10:67508473-67511621 (+)
WSB/EiJ	ENSIUOG00005034610	lncRNA gene	Chr10:65763236-65766468 (+)

Homology

• Gene Tree
  Gm40685
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40685
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000112798 (Evidence)
• NCBI Gene
  105245199

Representative Sequences			Length	Strain/Species
genomic	105245199	NCBI Gene Model | MGI Sequence Detail	3364	C57BL/6J
transcript	XR_871809	RefSeq | MGI Sequence Detail	741	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87