Gm40660 Gene Detail

Summary

• Symbol
  Gm40660
• Name
  predicted gene, 40660

• Feature Type
  lncRNA gene
• IDs
  MGI:5623545
  NCBI Gene: 105245170
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:5505228-5520233 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  507 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623545	lncRNA gene	Chr13:5476155-5610328 (+)
129S1/SvImJ	ENSMUSG00200006650	lncRNA gene	Chr13:2671653-2777070 (+)
A/J	ENSMUSG00195013649	lncRNA gene	Chr13:2079991-2185417 (+)
AKR/J	ENSMUSG00220013333	lncRNA gene	Chr13:2374845-2480269 (+)
BALB/cJ	ENSMUSG00180010549	lncRNA gene	Chr13:2492149-2597592 (+)
C3H/HeJ	ENSMUSG00175008953	lncRNA gene	Chr13:2527518-2632942 (+)
C57BL/6NJ	ENSMUSG00215024184	lncRNA gene	Chr13:2747399-2852835 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026091	lncRNA gene	Chr13:2761923-2866017 (+)
CBA/J	ENSMUSG00210023062	lncRNA gene	Chr13:2066180-2171610 (+)
DBA/2J	ENSMUSG00185025825	lncRNA gene	Chr13:2753988-2859415 (+)
FVB/NJ	ENSMUSG00205025035	lncRNA gene	Chr13:2496604-2602032 (+)
JF1/MsJ	ENSUMUG00000012245	lncRNA gene	Chr13:2774683-2878562 (+)
LP/J	ENSMUSG00230007530	lncRNA gene	Chr13:12229448-12333311 (+)
NOD/ShiLtJ	ENSMUSG00190014516	lncRNA gene	Chr13:2219322-2324735 (+)
NZO/HlLtJ	ENSMUSG00225034650	lncRNA gene	Chr13:6134690-6238568 (+)
PWK/PhJ	ENSLUMG00010017160	lncRNA gene	Chr13:2126780-2230712 (+)
SPRET/EiJ	ENSMSPG00010026178	lncRNA gene	Chr13:2109747-2213798 (+)
WSB/EiJ	ENSIUOG00005023791	lncRNA gene	Chr13:2101601-2207057 (+)

Homology

• Gene Tree
  Gm40660
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000114098 (Evidence)
• NCBI Gene
  105245170

Representative Sequences			Length	Strain/Species
genomic	105245170	NCBI Gene Model | MGI Sequence Detail	15006	C57BL/6J
transcript	XR_873109	RefSeq | MGI Sequence Detail	255	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;