Gm40655 Gene Detail

Summary

• Symbol
  Gm40655
• Name
  predicted gene, 40655

• Feature Type
  lncRNA gene
• IDs
  MGI:5623540
  NCBI Gene: 105245164
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:3875479-3886003 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623540	lncRNA gene	Chr13:3875479-3893909 (+)
129S1/SvImJ	ENSMUSG00200006188	lncRNA gene	Chr13:1053445-1071855 (+)
A/J	ENSMUSG00195013368	lncRNA gene	Chr13:461600-480009 (+)
AKR/J	ENSMUSG00220013369	lncRNA gene	Chr13:744310-762685 (+)
BALB/cJ	ENSMUSG00180010019	lncRNA gene	Chr13:873799-892208 (+)
C3H/HeJ	ENSMUSG00175008545	lncRNA gene	Chr13:897448-915851 (+)
C57BL/6NJ	ENSMUSG00215019962	lncRNA gene	Chr13:1117254-1135662 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025360	lncRNA gene	Chr13:1118080-1136460 (+)
CBA/J	ENSMUSG00210023204	lncRNA gene	Chr13:436156-454556 (+)
DBA/2J	ENSMUSG00185024584	lncRNA gene	Chr13:1123888-1142288 (+)
FVB/NJ	ENSMUSG00205024269	lncRNA gene	Chr13:875449-893858 (+)
JF1/MsJ	ENSUMUG00000013409	lncRNA gene	Chr13:1120020-1154910 (+)
LP/J	ENSMUSG00230007424	lncRNA gene	Chr13:10592511-10611055 (+)
NOD/ShiLtJ	ENSMUSG00190013131	lncRNA gene	Chr13:581574-599942 (+)
NZO/HlLtJ	ENSMUSG00225034549	lncRNA gene	Chr13:4480185-4498710 (+)
PWK/PhJ	ENSLUMG00010017172	lncRNA gene	Chr13:500390-518888 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005022066	lncRNA gene	Chr13:470172-488585 (+)

Homology

• Gene Tree
  Gm40655
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000114091 (Evidence)
• NCBI Gene
  105245164

Representative Sequences			Length	Strain/Species
genomic	105245164	NCBI Gene Model | MGI Sequence Detail	10525	C57BL/6J
transcript	XR_873102	RefSeq | MGI Sequence Detail	322	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;