Gm40652 Gene Detail

Summary

• Symbol
  Gm40652
• Name
  predicted gene, 40652

• Feature Type
  lncRNA gene
• IDs
  MGI:5623537
  NCBI Gene: 105245160
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:56993318-57033731 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1211 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623537	lncRNA gene	Chr10:56993318-57036276 (+)
129S1/SvImJ	ENSMUSG00200029683	lncRNA gene	Chr10:53906569-53946972 (+)
A/J	ENSMUSG00195028076	lncRNA gene	Chr10:54160541-54200945 (+)
AKR/J	ENSMUSG00220042118	lncRNA gene	Chr10:53912514-53923032 (+)
BALB/cJ	ENSMUSG00180028571	lncRNA gene	Chr10:54289909-54330313 (+)
C3H/HeJ	ENSMUSG00175026075	lncRNA gene	Chr10:54115568-54155966 (+)
C57BL/6NJ	ENSMUSG00215030066	lncRNA gene	Chr10:53812952-53853352 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030096	lncRNA gene	Chr10:53957985-53988724 (+)
CBA/J	ENSMUSG00210037646	lncRNA gene	Chr10:53927688-53968093 (+)
DBA/2J	ENSMUSG00185042475	lncRNA gene	Chr10:54090233-54130636 (+)
FVB/NJ	ENSMUSG00205034290	lncRNA gene	Chr10:53991533-54031935 (+)
JF1/MsJ	ENSUMUG00000023091	lncRNA gene	Chr10:53708825-53739521 (+)
LP/J	ENSMUSG00230023795	lncRNA gene	Chr10:55891380-55931770 (+)
NOD/ShiLtJ	ENSMUSG00190038113	lncRNA gene	Chr10:54271923-54312297 (+)
NZO/HlLtJ	ENSMUSG00225022726	lncRNA gene	Chr10:60175167-60208421 (+)
PWK/PhJ	ENSLUMG00010024132	lncRNA gene	Chr10:53911942-53942667 (+)
SPRET/EiJ	ENSMSPG00010027423	lncRNA gene	Chr10:55517594-55555410 (+)
WSB/EiJ	ENSIUOG00005043521	lncRNA gene	Chr10:53923863-53957141 (+)

Homology

• Gene Tree
  Gm40652
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40652
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000112345 (Evidence)
• NCBI Gene
  105245160

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112345	Ensembl Gene Model | MGI Sequence Detail	40414	C57BL/6J
transcript	ENSMUST00000276768	Ensembl | MGI Sequence Detail	1243	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87