Gm40650 Gene Detail

Summary

• Symbol
  Gm40650
• Name
  predicted gene, 40650

• Feature Type
  lncRNA gene
• IDs
  MGI:5623535
  NCBI Gene: 105245158
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:53364368-53390640 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  722 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623535	lncRNA gene	Chr10:53364318-53390643 (+)
129S1/SvImJ	ENSMUSG00200028710	lncRNA gene	Chr10:50261649-50287978 (+)
A/J	ENSMUSG00195028276	lncRNA gene	Chr10:50529631-50555957 (+)
AKR/J	ENSMUSG00220006340	lncRNA gene	Chr10:50220751-50247076 (+)
BALB/cJ	ENSMUSG00180029231	lncRNA gene	Chr10:50659253-50685578 (+)
C3H/HeJ	ENSMUSG00175026743	lncRNA gene	Chr10:50402154-50428479 (+)
C57BL/6NJ	ENSMUSG00215002300	lncRNA gene	Chr10:50164352-50190678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008542	lncRNA gene	Chr10:50389045-50416614 (+)
CBA/J	ENSMUSG00210008619	lncRNA gene	Chr10:50307966-50334291 (+)
DBA/2J	ENSMUSG00185003333	lncRNA gene	Chr10:50459712-50486038 (+)
FVB/NJ	ENSMUSG00205005516	lncRNA gene	Chr10:50393892-50420219 (+)
JF1/MsJ	ENSUMUG00000026495	lncRNA gene	Chr10:50157384-50184963 (+)
LP/J	ENSMUSG00230023972	lncRNA gene	Chr10:52261113-52287443 (+)
NOD/ShiLtJ	ENSMUSG00190005667	lncRNA gene	Chr10:50626448-50652774 (+)
NZO/HlLtJ	ENSMUSG00225022776	lncRNA gene	Chr10:56542026-56568352 (+)
PWK/PhJ	ENSLUMG00010004566	lncRNA gene	Chr10:50312541-50340156 (+)
SPRET/EiJ	ENSMSPG00010028250	lncRNA gene	Chr10:51673250-51712319 (+)
WSB/EiJ	ENSIUOG00005042986	lncRNA gene	Chr10:50269142-50295462 (+)

Homology

• Gene Tree
  Gm40650
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40650
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000112733 (Evidence)
• NCBI Gene
  105245158

Representative Sequences			Length	Strain/Species
genomic	105245158	NCBI Gene Model | MGI Sequence Detail	26273	C57BL/6J
transcript	NR_169148	RefSeq | MGI Sequence Detail	1834	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm40650:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93329	Chr10:53364366-53364374 (+)	2 bp