Gm40649 Gene Detail

Summary

• Symbol
  Gm40649
• Name
  predicted gene, 40649

• Feature Type
  lncRNA gene
• IDs
  MGI:5623534
  NCBI Gene: 105245157
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:53057261-53083235 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1039 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623534	lncRNA gene	Chr10:53056841-53160348 (+)
129S1/SvImJ	ENSMUSG00200007797	lncRNA gene	Chr10:49954561-49993855 (+)
A/J	ENSMUSG00195003166	lncRNA gene	Chr10:50222549-50261840 (+)
AKR/J	ENSMUSG00220006884	lncRNA gene	Chr10:49913640-49952931 (+)
BALB/cJ	ENSMUSG00180012310	lncRNA gene	Chr10:50352192-50391475 (+)
C3H/HeJ	ENSMUSG00175010571	lncRNA gene	Chr10:50095097-50134384 (+)
C57BL/6NJ	ENSMUSG00215002406	lncRNA gene	Chr10:49857239-49896524 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008924	lncRNA gene	Chr10:50072337-50118656 (+)
CBA/J	ENSMUSG00210008583	lncRNA gene	Chr10:50000937-50040217 (+)
DBA/2J	ENSMUSG00185003214	lncRNA gene	Chr10:50152641-50191926 (+)
FVB/NJ	ENSMUSG00205005326	lncRNA gene	Chr10:50085173-50124466 (+)
JF1/MsJ	ENSUMUG00000029933	lncRNA gene	Chr10:49836241-49876053 (+)
LP/J	ENSMUSG00230024107	lncRNA gene	Chr10:51954083-51993375 (+)
NOD/ShiLtJ	ENSMUSG00190005631	lncRNA gene	Chr10:50319359-50358644 (+)
NZO/HlLtJ	ENSMUSG00225022795	lncRNA gene	Chr10:56234990-56274280 (+)
PWK/PhJ	ENSLUMG00010004944	lncRNA gene	Chr10:49989756-50029515 (+)
SPRET/EiJ	ENSMSPG00010026765	lncRNA gene	Chr10:51321312-51374832 (+)
WSB/EiJ	ENSIUOG00005015114	lncRNA gene	Chr10:49963739-50004850 (+)

Homology

• Gene Tree
  Gm40649
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40649
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000112376 (Evidence)
• NCBI Gene
  105245157

Representative Sequences			Length	Strain/Species
genomic	105245157	NCBI Gene Model | MGI Sequence Detail	25975	C57BL/6J
transcript	XR_871648	RefSeq | MGI Sequence Detail	332	C57BL/6J

References

• Summaries
  All 10

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841