Gm40630 Gene Detail

Summary

• Symbol
  Gm40630
• Name
  predicted gene, 40630

• Feature Type
  lncRNA gene
• IDs
  MGI:5623515
  NCBI Gene: 105245137
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:41932712-41957942 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  793 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623515	lncRNA gene	Chr10:41908186-41957942 (-)
129S1/SvImJ	ENSMUSG00200009221	lncRNA gene	Chr10:38794507-38827980 (-)
A/J	ENSMUSG00195019296	lncRNA gene	Chr10:39069773-39106240 (-)
AKR/J	ENSMUSG00220027713	lncRNA gene	Chr10:38746242-38782708 (-)
BALB/cJ	ENSMUSG00180016683	lncRNA gene	Chr10:39154866-39191346 (-)
C3H/HeJ	ENSMUSG00175012565	lncRNA gene	Chr10:38949117-38985579 (-)
C57BL/6NJ	ENSMUSG00215010276	lncRNA gene	Chr10:38698443-38734895 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029465	lncRNA gene	Chr10:39145188-39178760 (-)
CBA/J	ENSMUSG00210026222	lncRNA gene	Chr10:38842605-38879076 (-)
DBA/2J	ENSMUSG00185007797	lncRNA gene	Chr10:38995207-39031660 (-)
FVB/NJ	ENSMUSG00205015420	lncRNA gene	Chr10:38910419-38946889 (-)
JF1/MsJ	ENSUMUG00000038561	lncRNA gene	Chr10:38780328-38813643 (-)
LP/J	ENSMUSG00230006385	lncRNA gene	Chr10:40784331-40817796 (-)
NOD/ShiLtJ	ENSMUSG00190036016	lncRNA gene	Chr10:39123376-39159828 (-)
NZO/HlLtJ	ENSMUSG00225019569	lncRNA gene	Chr10:45088197-45124657 (-)
PWK/PhJ	ENSLUMG00010008146	lncRNA gene	Chr10:38903748-38937043 (-)
SPRET/EiJ	ENSMSPG00010021403	lncRNA gene	Chr10:39931857-39965275 (-)
WSB/EiJ	ENSIUOG00005015703	lncRNA gene	Chr10:38673637-38706805 (-)

Homology

• Gene Tree
  Gm40630
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40630
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000120201 (Evidence)
• NCBI Gene
  105245137

Representative Sequences			Length	Strain/Species
genomic	105245137	NCBI Gene Model | MGI Sequence Detail	25231	C57BL/6J
transcript	AK142588	GenBank | ENA | DDBJ | MGI Sequence Detail	2914	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm40630:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97424	Chr10:41944602-41944613 (-)	13,334 bp