Gm40623 Gene Detail

Summary

• Symbol
  Gm40623
• Name
  predicted gene, 40623
• Synonyms
  Gm49446

• Feature Type
  lncRNA gene
• IDs
  MGI:5623508
  NCBI Gene: 105245129
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:35714513-35730337 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  493 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623508	lncRNA gene	Chr10:35714486-35730471 (+)
129S1/SvImJ	ENSMUSG00200009321	lncRNA gene	Chr10:32560116-32576102 (+)
A/J	ENSMUSG00195018817	lncRNA gene	Chr10:32868388-32884377 (+)
AKR/J	ENSMUSG00220027796	lncRNA gene	Chr10:32542540-32558529 (+)
BALB/cJ	ENSMUSG00180016565	lncRNA gene	Chr10:32956894-32972882 (+)
C3H/HeJ	ENSMUSG00175012455	lncRNA gene	Chr10:32745560-32761545 (+)
C57BL/6NJ	ENSMUSG00215011839	lncRNA gene	Chr10:32500955-32516941 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029731	lncRNA gene	Chr10:32964362-32979522 (+)
CBA/J	ENSMUSG00210026005	lncRNA gene	Chr10:32638418-32654406 (+)
DBA/2J	ENSMUSG00185008413	lncRNA gene	Chr10:32797486-32813472 (+)
FVB/NJ	ENSMUSG00205013510	lncRNA gene	Chr10:32743966-32759955 (+)
JF1/MsJ	ENSUMUG00000039001	lncRNA gene	Chr10:32575172-32590359 (+)
LP/J	ENSMUSG00230015460	lncRNA gene	Chr10:34558297-34574284 (+)
NOD/ShiLtJ	ENSMUSG00190032271	lncRNA gene	Chr10:32922766-32938751 (+)
NZO/HlLtJ	ENSMUSG00225033865	lncRNA gene	Chr10:38816277-38832263 (+)
PWK/PhJ	ENSLUMG00010008207	lncRNA gene	Chr10:32609192-32624350 (+)
SPRET/EiJ	ENSMSPG00010022309	lncRNA gene	Chr10:33599085-33608460 (+)
WSB/EiJ	ENSIUOG00005015539	lncRNA gene	Chr10:32395171-32411169 (+)

Homology

• Gene Tree
  Gm40623
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40623
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000111550 (Evidence)
• NCBI Gene
  105245129

Representative Sequences			Length	Strain/Species
genomic	105245129	NCBI Gene Model | MGI Sequence Detail	15825	C57BL/6J
transcript	XR_003948862	RefSeq | MGI Sequence Detail	3900	C57BL/6J

Other
Accession IDs

MGI:6155094

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87