Gm40621 Gene Detail

Summary

• Symbol
  Gm40621
• Name
  predicted gene, 40621

• Feature Type
  lncRNA gene
• IDs
  MGI:5623506
  NCBI Gene: 105245127
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:29243516-29251525 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  351 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623506	lncRNA gene	Chr10:29233740-29251525 (+)
129S1/SvImJ	ENSMUSG00200010020	lncRNA gene	Chr10:26085483-26093688 (+)
A/J	ENSMUSG00195014638	lncRNA gene	Chr10:26367396-26375601 (+)
AKR/J	ENSMUSG00220011598	lncRNA gene	Chr10:26062073-26070278 (+)
BALB/cJ	ENSMUSG00180017782	lncRNA gene	Chr10:26492481-26500686 (+)
C3H/HeJ	ENSMUSG00175025250	lncRNA gene	Chr10:26228445-26236650 (+)
C57BL/6NJ	ENSMUSG00215013235	lncRNA gene	Chr10:26040683-26048889 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014262	lncRNA gene	Chr10:25868461-25876905 (+)
CBA/J	ENSMUSG00210023476	lncRNA gene	Chr10:26175125-26183330 (+)
DBA/2J	ENSMUSG00185007421	lncRNA gene	Chr10:26327810-26336017 (+)
FVB/NJ	ENSMUSG00205010437	lncRNA gene	Chr10:26318659-26326857 (+)
JF1/MsJ	ENSUMUG00000017487	lncRNA gene	Chr10:26129076-26137284 (+)
LP/J	ENSMUSG00230012272	lncRNA gene	Chr10:28095895-28104100 (+)
NOD/ShiLtJ	ENSMUSG00190015439	lncRNA gene	Chr10:26433060-26441265 (+)
NZO/HlLtJ	ENSMUSG00225034472	lncRNA gene	Chr10:32354850-32363057 (+)
PWK/PhJ	ENSLUMG00010010260	lncRNA gene	Chr10:25988168-25996385 (+)
SPRET/EiJ	ENSMSPG00010015140	lncRNA gene	Chr10:26916443-26924632 (+)
WSB/EiJ	ENSIUOG00005032298	lncRNA gene	Chr10:25802565-25810745 (+)

Homology

• Gene Tree
  Gm40621
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40621
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000111646 (Evidence)
• NCBI Gene
  105245127

Representative Sequences			Length	Strain/Species
genomic	105245127	NCBI Gene Model | MGI Sequence Detail	8010	C57BL/6J
transcript	XR_871566	RefSeq | MGI Sequence Detail	2254	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87