Gm40617 Gene Detail

Summary

• Symbol
  Gm40617
• Name
  predicted gene, 40617

• Feature Type
  lncRNA gene
• IDs
  MGI:5623502
  NCBI Gene: 105245123
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:25174507-25182330 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  393 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623502	lncRNA gene	Chr10:25174507-25182334 (+)
129S1/SvImJ	ENSMUSG00200010405	lncRNA gene	Chr10:22011720-22019323 (+)
A/J	ENSMUSG00195014968	lncRNA gene	Chr10:22317714-22325316 (+)
AKR/J	ENSMUSG00220011837	lncRNA gene	Chr10:21998091-22005697 (+)
BALB/cJ	ENSMUSG00180019739	lncRNA gene	Chr10:22440947-22448546 (+)
C3H/HeJ	ENSMUSG00175026143	lncRNA gene	Chr10:22114808-22122411 (+)
C57BL/6NJ	ENSMUSG00215015081	lncRNA gene	Chr10:21963167-21970998 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014600	lncRNA gene	Chr10:21745106-21752676 (+)
CBA/J	ENSMUSG00210023440	lncRNA gene	Chr10:22079514-22087345 (+)
DBA/2J	ENSMUSG00185008215	lncRNA gene	Chr10:22249456-22257283 (+)
FVB/NJ	ENSMUSG00205010303	lncRNA gene	Chr10:22255633-22263234 (+)
JF1/MsJ	ENSUMUG00000021673	lncRNA gene	Chr10:22031456-22039119 (+)
LP/J	ENSMUSG00230011987	lncRNA gene	Chr10:24046278-24053876 (+)
NOD/ShiLtJ	ENSMUSG00190016121	lncRNA gene	Chr10:22388924-22396748 (+)
NZO/HlLtJ	ENSMUSG00225031235	lncRNA gene	Chr10:28297147-28304732 (+)
PWK/PhJ	ENSLUMG00010010860	lncRNA gene	Chr10:21936465-21944073 (+)
SPRET/EiJ	ENSMSPG00010015623	lncRNA gene	Chr10:22675404-22682739 (+)
WSB/EiJ	ENSIUOG00005032229	lncRNA gene	Chr10:21660768-21668388 (+)

Homology

• Gene Tree
  Gm40617
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm40617
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000112352 (Evidence)
• NCBI Gene
  105245123

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112352	Ensembl Gene Model | MGI Sequence Detail	7824	C57BL/6J
transcript	ENSMUST00000218840	Ensembl | MGI Sequence Detail	2420	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139