Gm40572 Gene Detail

Summary

• Symbol
  Gm40572
• Name
  predicted gene, 40572

• Feature Type
  lncRNA gene
• IDs
  MGI:5623457
  NCBI Gene: 105245070
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:108669779-108677283 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  305 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623457	lncRNA gene	Chr12:108669231-108677283 (-)
129S1/SvImJ	ENSMUSG00200029806	lncRNA gene	Chr12:100448235-100450204 (-)
A/J	ENSMUSG00195049888	lncRNA gene	Chr12:103009419-103011381 (-)
AKR/J	ENSMUSG00220044300	lncRNA gene	Chr12:100880906-100882877 (-)
BALB/cJ	ENSMUSG00180049151	lncRNA gene	Chr12:102211354-102213323 (-)
C3H/HeJ	ENSMUSG00175045845	lncRNA gene	Chr12:104820449-104822418 (-)
C57BL/6NJ	ENSMUSG00215047295	lncRNA gene	Chr12:101484264-101486233 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021890	lncRNA gene	Chr12:100962891-100964844 (-)
CBA/J	ENSMUSG00210031941	lncRNA gene	Chr12:101882069-101884038 (-)
DBA/2J	ENSMUSG00185031020	lncRNA gene	Chr12:103668934-103670903 (-)
FVB/NJ	ENSMUSG00205020316	lncRNA gene	Chr12:100899224-100901204 (-)
JF1/MsJ	ENSUMUG00000024372	lncRNA gene	Chr12:108424897-108426874 (-)
LP/J	ENSMUSG00230032235	lncRNA gene	Chr12:110713185-110715154 (-)
NOD/ShiLtJ	ENSMUSG00190033673	lncRNA gene	Chr12:84331116-84333083 (+)
NZO/HlLtJ	ENSMUSG00225039753	lncRNA gene	Chr12:112472282-112474264 (-)
PWK/PhJ	ENSLUMG00010051457	lncRNA gene	Chr12:101903215-101905192 (-)
SPRET/EiJ	ENSMSPG00010023380	lncRNA gene	Chr12:104194399-104196161 (-)
WSB/EiJ	ENSIUOG00005010152	lncRNA gene	Chr12:100899470-100901437 (-)

Homology

• Gene Tree
  Gm40572
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000120464 (Evidence)
• NCBI Gene
  105245070

Representative Sequences			Length	Strain/Species
genomic	105245070	NCBI Gene Model | MGI Sequence Detail	7505	C57BL/6J
transcript	XR_872978	RefSeq | MGI Sequence Detail	881	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40572:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117694	Chr12:108677227-108677250 (-)	44 bp