Gm40528 Gene Detail

Summary

• Symbol
  Gm40528
• Name
  predicted gene, 40528

• Feature Type
  lncRNA gene
• IDs
  MGI:5623413
  NCBI Gene: 105245014
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:66772979-66791185 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  411 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623413	lncRNA gene	Chr9:66702827-66803818 (+)
129S1/SvImJ	ENSMUSG00200044447	lncRNA gene	Chr9:63878335-63901545 (+)
A/J	ENSMUSG00195027434	lncRNA gene	Chr9:63599039-63622238 (+)
AKR/J	ENSMUSG00220042977	lncRNA gene	Chr9:63737053-63760253 (+)
BALB/cJ	ENSMUSG00180018121	lncRNA gene	Chr9:63718568-63741768 (+)
C3H/HeJ	ENSMUSG00175013418	lncRNA gene	Chr9:63732265-63755471 (+)
C57BL/6NJ	ENSMUSG00215032321	lncRNA gene	Chr9:63722180-63745354 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032794	lncRNA gene	Chr9:63631412-63654539 (+)
CBA/J	ENSMUSG00210014432	lncRNA gene	Chr9:63819344-63842520 (+)
DBA/2J	ENSMUSG00185035005	lncRNA gene	Chr9:63844227-63867458 (+)
FVB/NJ	ENSMUSG00205033718	lncRNA gene	Chr9:64162645-64185562 (+)
JF1/MsJ	ENSUMUG00000043076	lncRNA gene	Chr9:63919201-63942116 (+)
LP/J	ENSMUSG00230027268	lncRNA gene	Chr9:64077245-64100457 (+)
NOD/ShiLtJ	ENSMUSG00190022433	lncRNA gene	Chr9:63944353-63967582 (+)
NZO/HlLtJ	ENSMUSG00225046316	lncRNA gene	Chr9:64143849-64167079 (+)
PWK/PhJ	ENSLUMG00010026593	lncRNA gene	Chr9:63874970-63897923 (+)
SPRET/EiJ	ENSMSPG00010023680	lncRNA gene	Chr9:64939229-64962481 (+)
WSB/EiJ	ENSIUOG00005028209	lncRNA gene	Chr9:63332951-63356051 (+)

Homology

• Gene Tree
  Gm40528
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40528
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120058 (Evidence)
• NCBI Gene
  105245014

Representative Sequences			Length	Strain/Species
genomic	105245014	NCBI Gene Model | MGI Sequence Detail	18207	C57BL/6J
transcript	XR_870875	RefSeq | MGI Sequence Detail	7298	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40528:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85771	Chr9:66779841-66779876 (+)	6,880 bp