Gm40518 Gene Detail

Summary

• Symbol
  Gm40518
• Name
  predicted gene, 40518

• Feature Type
  lncRNA gene
• IDs
  MGI:5623403
  NCBI Gene: 105245003
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:48044046-48070046 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623403	lncRNA gene	Chr9:48043802-48070263 (-)
129S1/SvImJ	ENSMUSG00200018874	lncRNA gene	Chr9:45168934-45188085 (-)
A/J	ENSMUSG00195024788	lncRNA gene	Chr9:44892400-44911555 (-)
AKR/J	ENSMUSG00220042110	lncRNA gene	Chr9:44980023-44999180 (-)
BALB/cJ	ENSMUSG00180033535	lncRNA gene	Chr9:45003873-45023019 (-)
C3H/HeJ	ENSMUSG00175016895	lncRNA gene	Chr9:45016064-45035211 (-)
C57BL/6NJ	ENSMUSG00215037258	lncRNA gene	Chr9:44966900-44993362 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016033	lncRNA gene	Chr9:44951424-44978128 (-)
CBA/J	ENSMUSG00210016792	lncRNA gene	Chr9:45058374-45077518 (-)
DBA/2J	ENSMUSG00185012415	lncRNA gene	Chr9:45130323-45149470 (-)
FVB/NJ	ENSMUSG00205042838	lncRNA gene	Chr9:45369999-45389140 (-)
JF1/MsJ	ENSUMUG00000046202	lncRNA gene	Chr9:45188966-45215424 (-)
LP/J	ENSMUSG00230042293	lncRNA gene	Chr9:45423636-45442777 (-)
NOD/ShiLtJ	ENSMUSG00190025664	lncRNA gene	Chr9:45208851-45227998 (-)
NZO/HlLtJ	ENSMUSG00225045093	lncRNA gene	Chr9:45385487-45404635 (-)
PWK/PhJ	ENSLUMG00010022248	lncRNA gene	Chr9:45152096-45171253 (-)
SPRET/EiJ	ENSMSPG00010011627	lncRNA gene	Chr9:45918866-45938052 (-)
WSB/EiJ	ENSIUOG00005023089	lncRNA gene	Chr9:44627625-44646842 (-)

Homology

• Gene Tree
  Gm40518
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000110924 (Evidence)
• NCBI Gene
  105245003

Representative Sequences			Length	Strain/Species
genomic	105245003	NCBI Gene Model | MGI Sequence Detail	26001	C57BL/6J
transcript	XR_870719	RefSeq | MGI Sequence Detail	3619	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;