Gm40493 Gene Detail

Summary

• Symbol
  Gm40493
• Name
  predicted gene, 40493
• Synonyms
  Gm45653

• Feature Type
  lncRNA gene
• IDs
  MGI:5623378
  NCBI Gene: 105244975
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:39126864-39138515 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  429 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623378	lncRNA gene	Chr8:39114642-39138515 (+)
129S1/SvImJ	ENSMUSG00200008091	lncRNA gene	Chr8:34259642-34271148 (+)
A/J	ENSMUSG00195005978	lncRNA gene	Chr8:34734325-34745838 (+)
AKR/J	ENSMUSG00220005899	lncRNA gene	Chr8:34523288-34534806 (+)
BALB/cJ	ENSMUSG00180003465	lncRNA gene	Chr8:34279206-34290717 (+)
C3H/HeJ	ENSMUSG00175015177	lncRNA gene	Chr8:34454153-34465661 (+)
C57BL/6NJ	ENSMUSG00215008913	lncRNA gene	Chr8:34196827-34208132 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005910	lncRNA gene	Chr8:34407485-34418863 (+)
CBA/J	ENSMUSG00210012796	lncRNA gene	Chr8:34276553-34288063 (+)
DBA/2J	ENSMUSG00185002452	lncRNA gene	Chr8:40197953-40209460 (+)
FVB/NJ	ENSMUSG00205002379	lncRNA gene	Chr8:33468289-33479801 (+)
JF1/MsJ	ENSUMUG00000015779	lncRNA gene	Chr8:41878198-41889502 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016062	lncRNA gene	Chr8:34314106-34325613 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012978	lncRNA gene	Chr8:34145909-34157232 (+)
SPRET/EiJ	ENSMSPG00010004590	lncRNA gene	Chr8:34852326-34852539 (+)
WSB/EiJ	ENSIUOG00005005891	lncRNA gene	Chr8:35096265-35107776 (+)

Homology

• Gene Tree
  Gm40493
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000110236 (Evidence)
• NCBI Gene
  105244975

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110236	Ensembl Gene Model | MGI Sequence Detail	11652	C57BL/6J
transcript	ENSMUST00000210223	Ensembl | MGI Sequence Detail	748	Not Applicable

Other
Accession IDs

MGI:5791489

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9