Gm40481 Gene Detail

Summary

• Symbol
  Gm40481
• Name
  predicted gene, 40481

• Feature Type
  lncRNA gene
• IDs
  MGI:5623366
  NCBI Gene: 105244963
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:86262750-86288580 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623366	lncRNA gene	Chr12:86262750-86294488 (-)
129S1/SvImJ	ENSMUSG00200051120	lncRNA gene	Chr12:78303236-78303705 (-)
A/J	ENSMUSG00195034870	lncRNA gene	Chr12:80922875-80923344 (-)
AKR/J	ENSMUSG00220049525	lncRNA gene	Chr12:78718821-78719290 (-)
BALB/cJ	ENSMUSG00180027216	lncRNA gene	Chr12:79960605-79961074 (-)
C3H/HeJ	ENSMUSG00175041119	lncRNA gene	Chr12:83053647-83054116 (-)
C57BL/6NJ	ENSMUSG00215046970	lncRNA gene	Chr12:79267050-79267519 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031977	lncRNA gene	Chr12:79232171-79232644 (-)
CBA/J	ENSMUSG00210046328	lncRNA gene	Chr12:79466804-79467273 (-)
DBA/2J	ENSMUSG00185003095	lncRNA gene	Chr12:81324093-81324562 (-)
FVB/NJ	ENSMUSG00205042802	lncRNA gene	Chr12:79135687-79136156 (-)
JF1/MsJ	ENSUMUG00000050127	lncRNA gene	Chr12:85314538-85315011 (-)
LP/J	ENSMUSG00230045895	lncRNA gene	Chr12:88386227-88386696 (-)
NOD/ShiLtJ	ENSMUSG00190047549	lncRNA gene	Chr12:78523820-78524289 (-)
NZO/HlLtJ	ENSMUSG00225052790	lncRNA gene	Chr12:90423373-90423842 (-)
PWK/PhJ	ENSLUMG00010030783	lncRNA gene	Chr12:79334616-79335089 (-)
SPRET/EiJ	ENSMSPG00010021658	lncRNA gene	Chr12:81142362-81142877 (-)
WSB/EiJ	ENSIUOG00005045721	lncRNA gene	Chr12:79185972-79186441 (-)

Homology

• Gene Tree
  Gm40481
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm40481
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000120595 (Evidence)
• NCBI Gene
  105244963

Representative Sequences			Length	Strain/Species
genomic	105244963	NCBI Gene Model | MGI Sequence Detail	25831	C57BL/6J
transcript	XR_872885	RefSeq | MGI Sequence Detail	813	C57BL/6J

Other
Accession IDs

MGI:7336968

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40481:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3901	Chr12:86289511-86289521 (-)	-936 bp
Tssr117116	Chr12:86288453-86288461 (-)	123 bp