Gm40477 Gene Detail

Summary

• Symbol
  Gm40477
• Name
  predicted gene, 40477

• Feature Type
  lncRNA gene
• IDs
  MGI:5623362
  NCBI Gene: 105244959
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:85476286-85483231 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623362	lncRNA gene	Chr12:85460433-85496881 (-)
129S1/SvImJ	ENSMUSG00200050801	lncRNA gene	Chr12:77491056-77498197 (-)
A/J	ENSMUSG00195034589	lncRNA gene	Chr12:80110705-80117844 (-)
AKR/J	ENSMUSG00220049395	lncRNA gene	Chr12:77906629-77913768 (-)
BALB/cJ	ENSMUSG00180024547	lncRNA gene	Chr12:79148433-79155572 (-)
C3H/HeJ	ENSMUSG00175041507	lncRNA gene	Chr12:82241510-82248649 (-)
C57BL/6NJ	ENSMUSG00215047112	lncRNA gene	Chr12:78454902-78462043 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032676	lncRNA gene	Chr12:78416178-78423395 (-)
CBA/J	ENSMUSG00210046677	lncRNA gene	Chr12:78654692-78661834 (-)
DBA/2J	ENSMUSG00185002873	lncRNA gene	Chr12:80511954-80519093 (-)
FVB/NJ	ENSMUSG00205040165	lncRNA gene	Chr12:78323468-78330609 (-)
JF1/MsJ	ENSUMUG00000047966	lncRNA gene	Chr12:84497338-84504636 (-)
LP/J	ENSMUSG00230047067	lncRNA gene	Chr12:87574166-87581305 (-)
NOD/ShiLtJ	ENSMUSG00190048370	lncRNA gene	Chr12:77711732-77718873 (-)
NZO/HlLtJ	ENSMUSG00225053380	lncRNA gene	Chr12:89611286-89618425 (-)
PWK/PhJ	ENSLUMG00010028556	lncRNA gene	Chr12:78513862-78521163 (-)
SPRET/EiJ	ENSMSPG00010022030	lncRNA gene	Chr12:80332597-80339742 (-)
WSB/EiJ	ENSIUOG00005045550	lncRNA gene	Chr12:78356188-78363286 (-)

Homology

• Gene Tree
  Gm40477
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40477
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  3

• Ensembl
  ENSMUSG00000113940 (Evidence)
• NCBI Gene
  105244959

Representative Sequences			Length	Strain/Species
genomic	105244959	NCBI Gene Model | MGI Sequence Detail	6946	C57BL/6J
transcript	XR_001780657	RefSeq | MGI Sequence Detail	993	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40477:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117081	Chr12:85476857-85476861 (-)	6,372 bp