Gm40457 Gene Detail

Summary

• Symbol
  Gm40457
• Name
  predicted gene, 40457
• Synonyms
  Gm45018

• Feature Type
  lncRNA gene
• IDs
  MGI:5623342
  NCBI Gene: 105244935
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:128095561-128101571 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623342	lncRNA gene	Chr7:128089669-128101984 (-)
129S1/SvImJ	ENSMUSG00200027124	lncRNA gene	Chr7:114604745-114616224 (-)
A/J	ENSMUSG00195045850	lncRNA gene	Chr7:119110064-119122310 (-)
AKR/J	ENSMUSG00220016444	lncRNA gene	Chr7:112564486-112576729 (-)
BALB/cJ	ENSMUSG00180013690	lncRNA gene	Chr7:115805273-115817519 (-)
C3H/HeJ	ENSMUSG00175019115	lncRNA gene	Chr7:116532059-116544303 (-)
C57BL/6NJ	ENSMUSG00215036472	lncRNA gene	Chr7:115802076-115814318 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006629	lincRNA gene	Chr7:130512760-130524266 (-)
CAST/EiJ	ENSTCUG00005049352	lncRNA gene	Chr7:119041427-119053680 (-)
CBA/J	ENSMUSG00210023437	lncRNA gene	Chr7:116283054-116295298 (-)
DBA/2J	ENSMUSG00185050345	lncRNA gene	Chr7:120595900-120608142 (-)
FVB/NJ	ENSMUSG00205041153	lncRNA gene	Chr7:116234750-116246999 (-)
JF1/MsJ	ENSUMUG00000052134	lncRNA gene	Chr7:125619278-125630757 (-)
LP/J	ENSMUSG00230053311	lncRNA gene	Chr7:126703224-126714703 (-)
NOD/ShiLtJ	ENSMUSG00190018603	lncRNA gene	Chr7:116427931-116440180 (-)
NZO/HlLtJ	ENSMUSG00225012959	lncRNA gene	Chr7:124945318-124957561 (-)
PWK/PhJ	ENSLUMG00010043292	lncRNA gene	Chr7:114776020-114787485 (-)
SPRET/EiJ	ENSMSPG00010014176	lncRNA gene	Chr7:116034866-116046808 (-)
WSB/EiJ	ENSIUOG00005034092	lncRNA gene	Chr7:117130852-117143095 (-)

Homology

• Gene Tree
  Gm40457
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000108626 (Evidence)
• NCBI Gene
  105244935

Representative Sequences			Length	Strain/Species
genomic	105244935	NCBI Gene Model | MGI Sequence Detail	6011	C57BL/6J
transcript	XR_869961	RefSeq | MGI Sequence Detail	508	C57BL/6J

Other
Accession IDs

MGI:5753594

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40457:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75117	Chr7:128101555-128101558 (-)	14 bp