Gm40421 Gene Detail

Summary

• Symbol
  Gm40421
• Name
  predicted gene, 40421

• Feature Type
  lncRNA gene
• IDs
  MGI:5623306
  NCBI Gene: 105244893
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:51032043-51051695 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  428 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623306	lncRNA gene	Chr12:51032043-51075529 (-)
129S1/SvImJ	ENSMUSG00200032099	lncRNA gene	Chr12:42969996-42989133 (-)
A/J	ENSMUSG00195018464	lncRNA gene	Chr12:45555610-45575175 (-)
AKR/J	ENSMUSG00220027088	lncRNA gene	Chr12:43593985-43613543 (-)
BALB/cJ	ENSMUSG00180006198	lncRNA gene	Chr12:44547403-44566962 (-)
C3H/HeJ	ENSMUSG00175012133	lncRNA gene	Chr12:47618021-47637579 (-)
C57BL/6NJ	ENSMUSG00215015472	lncRNA gene	Chr12:43947041-43966613 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009398	lncRNA gene	Chr12:44143429-44162574 (-)
CBA/J	ENSMUSG00210010128	lncRNA gene	Chr12:44092446-44112002 (-)
DBA/2J	ENSMUSG00185014960	lncRNA gene	Chr12:46064790-46084349 (-)
FVB/NJ	ENSMUSG00205014948	lncRNA gene	Chr12:43887119-43906681 (-)
JF1/MsJ	ENSUMUG00000003634	lncRNA gene	Chr12:50197334-50216511 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016492	lncRNA gene	Chr12:43087712-43107269 (-)
NZO/HlLtJ	ENSMUSG00225041251	lncRNA gene	Chr12:55233970-55253528 (-)
PWK/PhJ	ENSLUMG00010016558	lncRNA gene	Chr12:44292116-44311266 (-)
SPRET/EiJ	ENSMSPG00010016133	lncRNA gene	Chr12:45588688-45608368 (-)
WSB/EiJ	ENSIUOG00005003891	lncRNA gene	Chr12:43900786-43919957 (-)

Homology

• Gene Tree
  Gm40421
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  1

• Ensembl
  ENSMUSG00000112685 (Evidence)
• NCBI Gene
  105244893

Representative Sequences			Length	Strain/Species
genomic	105244893	NCBI Gene Model | MGI Sequence Detail	19653	C57BL/6J
transcript	AK131776	GenBank | ENA | DDBJ | MGI Sequence Detail	654	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;