Gm40418 Gene Detail

Summary

• Symbol
  Gm40418
• Name
  predicted gene, 40418

• Feature Type
  lncRNA gene
• IDs
  MGI:5623303
  NCBI Gene: 105244890
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:50167092-50192019 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  584 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623303	lncRNA gene	Chr12:50167087-50211453 (+)
129S1/SvImJ	ENSMUSG00200031618	lncRNA gene	Chr12:42107016-42131947 (+)
A/J	ENSMUSG00195018591	lncRNA gene	Chr12:44686159-44711093 (+)
AKR/J	ENSMUSG00220027846	lncRNA gene	Chr12:42723342-42748270 (+)
BALB/cJ	ENSMUSG00180006233	lncRNA gene	Chr12:43678000-43702923 (+)
C3H/HeJ	ENSMUSG00175012365	lncRNA gene	Chr12:46748638-46773556 (+)
C57BL/6NJ	ENSMUSG00215015821	lncRNA gene	Chr12:43114075-43138997 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009315	lncRNA gene	Chr12:43275779-43300962 (+)
CBA/J	ENSMUSG00210010068	lncRNA gene	Chr12:43212740-43237661 (+)
DBA/2J	ENSMUSG00185014872	lncRNA gene	Chr12:45205081-45230009 (+)
FVB/NJ	ENSMUSG00205014619	lncRNA gene	Chr12:43023263-43048183 (+)
JF1/MsJ	ENSUMUG00000003483	lncRNA gene	Chr12:49343484-49366583 (+)
LP/J	ENSMUSG00230016996	lncRNA gene	Chr12:52229700-52254630 (+)
NOD/ShiLtJ	ENSMUSG00190016231	lncRNA gene	Chr12:42222760-42247684 (+)
NZO/HlLtJ	ENSMUSG00225041280	lncRNA gene	Chr12:54374286-54399212 (+)
PWK/PhJ	ENSLUMG00010016927	lncRNA gene	Chr12:43437068-43460245 (+)
SPRET/EiJ	ENSMSPG00010016426	lncRNA gene	Chr12:44716556-44754905 (+)
WSB/EiJ	ENSIUOG00005003775	lncRNA gene	Chr12:43041928-43066806 (+)

Homology

• Gene Tree
  Gm40418
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000112353 (Evidence)
• NCBI Gene
  105244890

Representative Sequences			Length	Strain/Species
genomic	105244890	NCBI Gene Model | MGI Sequence Detail	24928	C57BL/6J
transcript	XR_872735	RefSeq | MGI Sequence Detail	1013	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;