Gm40394 Gene Detail

Summary

• Symbol
  Gm40394
• Name
  predicted gene, 40394

• Feature Type
  lncRNA gene
• IDs
  MGI:5623279
  NCBI Gene: 105244861
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:36932970-36953013 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  938 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623279	lncRNA gene	Chr12:36927924-36973407 (+)
129S1/SvImJ	ENSMUSG00200015904	lncRNA gene	Chr12:28785523-28810643 (+)
A/J	ENSMUSG00195019061	lncRNA gene	Chr12:31491162-31518452 (+)
AKR/J	ENSMUSG00220031623	lncRNA gene	Chr12:29440445-29465573 (+)
BALB/cJ	ENSMUSG00180003631	lncRNA gene	Chr12:30482725-30510003 (+)
C3H/HeJ	ENSMUSG00175017660	lncRNA gene	Chr12:33536284-33563564 (+)
C57BL/6NJ	ENSMUSG00215020409	lncRNA gene	Chr12:29858563-29883688 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010369	lncRNA gene	Chr12:30251605-30277064 (+)
CBA/J	ENSMUSG00210008805	lncRNA gene	Chr12:30015342-30042618 (+)
DBA/2J	ENSMUSG00185020104	lncRNA gene	Chr12:32036256-32063577 (+)
FVB/NJ	ENSMUSG00205006353	lncRNA gene	Chr12:30064062-30091364 (+)
JF1/MsJ	ENSUMUG00000011028	lncRNA gene	Chr12:36160989-36188275 (+)
LP/J	ENSMUSG00230024790	lncRNA gene	Chr12:38958560-38983686 (+)
NOD/ShiLtJ	ENSMUSG00190018807	lncRNA gene	Chr12:28973584-29000886 (+)
NZO/HlLtJ	ENSMUSG00225031941	lncRNA gene	Chr12:41180492-41205616 (+)
PWK/PhJ	ENSLUMG00010011410	lncRNA gene	Chr12:30373981-30401217 (+)
SPRET/EiJ	ENSMSPG00010001960	lncRNA gene	Chr12:31075184-31104598 (+)
WSB/EiJ	ENSIUOG00005021136	lncRNA gene	Chr12:29717898-29743078 (+)

Homology

• Gene Tree
  Gm40394
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000113064 (Evidence)
• NCBI Gene
  105244861

Representative Sequences			Length	Strain/Species
genomic	105244861	NCBI Gene Model | MGI Sequence Detail	20044	C57BL/6J
transcript	XR_872686	RefSeq | MGI Sequence Detail	411	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;