Gm40392 Gene Detail

Summary

• Symbol
  Gm40392
• Name
  predicted gene, 40392

• Feature Type
  lncRNA gene
• IDs
  MGI:5623277
  NCBI Gene: 105244859
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:36314962-36341018 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  618 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623277	lncRNA gene	Chr12:36314924-36381893 (+)
129S1/SvImJ	ENSMUSG00200016031	lncRNA gene	Chr12:28172098-28198248 (+)
A/J	ENSMUSG00195019756	lncRNA gene	Chr12:30840552-30874475 (+)
AKR/J	ENSMUSG00220034616	lncRNA gene	Chr12:28824275-28849042 (+)
BALB/cJ	ENSMUSG00180028816	lncRNA gene	Chr12:29844689-29878617 (+)
C3H/HeJ	ENSMUSG00175018117	lncRNA gene	Chr12:32872244-32906155 (+)
C57BL/6NJ	ENSMUSG00215021741	lncRNA gene	Chr12:29245086-29271236 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010715	lncRNA gene	Chr12:29650725-29670578 (+)
CBA/J	ENSMUSG00210008945	lncRNA gene	Chr12:29377371-29411276 (+)
DBA/2J	ENSMUSG00185020667	lncRNA gene	Chr12:31400263-31426430 (+)
FVB/NJ	ENSMUSG00205006409	lncRNA gene	Chr12:29454979-29476764 (+)
JF1/MsJ	ENSUMUG00000013707	lncRNA gene	Chr12:35549585-35569420 (+)
LP/J	ENSMUSG00230024291	lncRNA gene	Chr12:38345127-38371287 (+)
NOD/ShiLtJ	ENSMUSG00190019213	lncRNA gene	Chr12:28343583-28369725 (+)
NZO/HlLtJ	ENSMUSG00225031721	lncRNA gene	Chr12:40567115-40593250 (+)
PWK/PhJ	ENSLUMG00010011531	lncRNA gene	Chr12:29764268-29784036 (+)
SPRET/EiJ	ENSMSPG00010002045	lncRNA gene	Chr12:30426078-30453723 (+)
WSB/EiJ	ENSIUOG00005021522	lncRNA gene	Chr12:29071772-29105747 (+)

Homology

• Gene Tree
  Gm40392
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000113832 (Evidence)
• NCBI Gene
  105244859

Representative Sequences			Length	Strain/Species
genomic	105244859	NCBI Gene Model | MGI Sequence Detail	26057	C57BL/6J
transcript	XR_872683	RefSeq | MGI Sequence Detail	678	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;