Gm40377 Gene Detail

Summary

• Symbol
  Gm40377
• Name
  predicted gene, 40377
• Synonyms
  Gm44362

• Feature Type
  lncRNA gene
• IDs
  MGI:5623262
  NCBI Gene: 105244843
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:73200033-73202047 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623262	lncRNA gene	Chr6:73199760-73202818 (+)
129S1/SvImJ	ENSMUSG00200013117	unclassified gene	Chr6:70099558-70101504 (+)
A/J	ENSMUSG00195048366	unclassified gene	Chr6:69822709-69824656 (+)
AKR/J	ENSMUSG00220046808	unclassified gene	Chr6:68856240-68858274 (+)
BALB/cJ	ENSMUSG00180038955	unclassified gene	Chr6:70224781-70226821 (+)
C3H/HeJ	ENSMUSG00175013010	unclassified gene	Chr6:107206315-107208261 (-)
C57BL/6NJ	ENSMUSG00215043704	unclassified gene	Chr6:70194835-70196847 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001703	unclassified gene	Chr6:70098154-70100125 (+)
CAST/EiJ	ENSTCUG00005037318	unclassified gene	Chr6:70339678-70341691 (+)
CBA/J	ENSMUSG00210043215	unclassified gene	Chr6:70036992-70038938 (+)
DBA/2J	ENSMUSG00185001011	unclassified gene	Chr6:70597146-70599092 (+)
FVB/NJ	ENSMUSG00205038687	unclassified gene	Chr6:69310484-69312431 (+)
JF1/MsJ	ENSUMUG00000047257	unclassified gene	Chr6:69645633-69647574 (+)
LP/J	ENSMUSG00230008257	unclassified gene	Chr6:71689611-71691557 (+)
NOD/ShiLtJ	ENSMUSG00190045168	unclassified gene	Chr6:69578645-69580588 (+)
NZO/HlLtJ	ENSMUSG00225007047	unclassified gene	Chr6:73662066-73664012 (+)
PWK/PhJ	ENSLUMG00010024252	unclassified gene	Chr6:69063970-69065919 (+)
SPRET/EiJ	ENSMSPG00010000399	unclassified gene	Chr6:70893531-70895520 (+)
WSB/EiJ	ENSIUOG00005026184	unclassified gene	Chr6:70594257-70596253 (+)

Homology

• Gene Tree
  Gm40377
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000107440 (Evidence)
• NCBI Gene
  105244843

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107440	Ensembl Gene Model | MGI Sequence Detail	2015	C57BL/6J
transcript	XR_869181	RefSeq | MGI Sequence Detail	590	C57BL/6J

Other
Accession IDs

MGI:5690754

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm40377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57171	Chr6:73200024-73200041 (+)	0 bp