Gm40372 Gene Detail

Summary

• Symbol
  Gm40372
• Name
  predicted gene, 40372

• Feature Type
  lncRNA gene
• IDs
  MGI:5623257
  NCBI Gene: 105244836
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:50476529-50482704 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  287 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623257	lncRNA gene	Chr6:50476529-50482754 (-)
129S1/SvImJ	ENSMUSG00200005790	lncRNA gene	Chr6:47408152-47414345 (-)
A/J	ENSMUSG00195006973	lncRNA gene	Chr6:47167151-47173363 (-)
AKR/J	ENSMUSG00220004462	lncRNA gene	Chr6:46867133-46873348 (-)
BALB/cJ	ENSMUSG00180026289	lncRNA gene	Chr6:47470594-47476810 (-)
C3H/HeJ	ENSMUSG00175018122	lncRNA gene	Chr6:47241183-47247395 (-)
C57BL/6NJ	ENSMUSG00215011740	lncRNA gene	Chr6:47428493-47434674 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005289	lncRNA gene	Chr6:46721290-46727576 (-)
CBA/J	ENSMUSG00210018563	lncRNA gene	Chr6:47286019-47292231 (-)
DBA/2J	ENSMUSG00185014470	lncRNA gene	Chr6:47867698-47873910 (-)
FVB/NJ	ENSMUSG00205030430	lncRNA gene	Chr6:47528663-47534875 (-)
JF1/MsJ	ENSUMUG00000014065	lncRNA gene	Chr6:47207157-47213439 (-)
LP/J	ENSMUSG00230020464	lncRNA gene	Chr6:48905495-48911687 (-)
NOD/ShiLtJ	ENSMUSG00190036316	lncRNA gene	Chr6:47203767-47209982 (-)
NZO/HlLtJ	ENSMUSG00225019870	lncRNA gene	Chr6:50925075-50931290 (-)
PWK/PhJ	ENSLUMG00010022292	lncRNA gene	Chr6:46868758-46874983 (-)
SPRET/EiJ	ENSMSPG00010010468	lncRNA gene	Chr6:47541058-47548179 (-)
WSB/EiJ	ENSIUOG00005029776	lncRNA gene	Chr6:47502629-47508819 (-)

Homology

• Gene Tree
  Gm40372
  

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000121037 (Evidence)
• NCBI Gene
  105244836

Representative Sequences			Length	Strain/Species
genomic	105244836	NCBI Gene Model | MGI Sequence Detail	6176	C57BL/6J
transcript	XR_869062	RefSeq | MGI Sequence Detail	285	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40372:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60917	Chr6:50482701-50482732 (-)	-13 bp