Gm40348 Gene Detail

Summary

• Symbol
  Gm40348
• Name
  predicted gene, 40348
• Synonyms
  Gm42562

• Feature Type
  lncRNA gene
• IDs
  MGI:5623233
  NCBI Gene: 105244802
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:137199192-137209688 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  371 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623233	lncRNA gene	Chr5:137167021-137209688 (+)
129S1/SvImJ	ENSMUSG00200048327	lncRNA gene	Chr5:130993029-130999329 (+)
A/J	ENSMUSG00195051460	lncRNA gene	Chr5:130495707-130502010 (+)
AKR/J	ENSMUSG00220051338	lncRNA gene	Chr5:129978282-129984668 (+)
BALB/cJ	ENSMUSG00180047315	lncRNA gene	Chr5:130592287-130598586 (+)
C3H/HeJ	ENSMUSG00175049471	lncRNA gene	Chr5:132519860-132526159 (+)
C57BL/6NJ	ENSMUSG00215049941	lncRNA gene	Chr5:130646234-130652463 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006222	lincRNA gene	Chr5:130008992-130015437 (+)
CAST/EiJ	ENSTCUG00005011190	lncRNA gene	Chr5:129869193-129875426 (+)
CBA/J	ENSMUSG00210008571	lncRNA gene	Chr5:131337423-131343722 (+)
DBA/2J	ENSMUSG00185055331	lncRNA gene	Chr5:134352803-134359102 (+)
FVB/NJ	ENSMUSG00205050140	lncRNA gene	Chr5:130237226-130243527 (+)
JF1/MsJ	ENSUMUG00000054925	lncRNA gene	Chr5:137249934-137256224 (+)
LP/J	ENSMUSG00230049868	lncRNA gene	Chr5:138466259-138472578 (+)
NOD/ShiLtJ	ENSMUSG00190049174	lncRNA gene	Chr5:130292095-130298395 (+)
NZO/HlLtJ	ENSMUSG00225024203	lncRNA gene	Chr5:146148061-146154253 (+)
PWK/PhJ	ENSLUMG00010019376	lncRNA gene	Chr5:129108389-129114728 (+)
SPRET/EiJ	ENSMSPG00010042158	lncRNA gene	Chr5:132511850-132518118 (+)
WSB/EiJ	ENSIUOG00005037381	lncRNA gene	Chr5:132948660-132955040 (+)

Homology

• Gene Tree
  Gm40348
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  64
• RefSeq
  3

• Ensembl
  ENSMUSG00000106466 (Evidence)
• NCBI Gene
  105244802

Representative Sequences			Length	Strain/Species
genomic	105244802	NCBI Gene Model | MGI Sequence Detail	10497	C57BL/6J
transcript	XR_868608	RefSeq | MGI Sequence Detail	1099	C57BL/6J

Other
Accession IDs

MGI:5662699

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;