Gm40331 Gene Detail

Summary

• Symbol
  Gm40331
• Name
  predicted gene, 40331
• Synonyms
  Gm42954

• Feature Type
  lncRNA gene
• IDs
  MGI:5623216
  NCBI Gene: 105244779
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:126864805-126981467 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3790 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623216	lncRNA gene	Chr5:126864802-126981539 (+)
129S1/SvImJ	ENSMUSG00200030074	lncRNA gene	Chr5:120663445-120696607 (+)
A/J	ENSMUSG00195013014	lncRNA gene	Chr5:120197562-120230169 (+)
AKR/J	ENSMUSG00220048260	lncRNA gene	Chr5:119675501-119708196 (+)
BALB/cJ	ENSMUSG00180041218	lncRNA gene	Chr5:120305208-120337818 (+)
C3H/HeJ	ENSMUSG00175043422	lncRNA gene	Chr5:122281434-122314115 (+)
C57BL/6NJ	ENSMUSG00215044079	lncRNA gene	Chr5:120341919-120374491 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006205	lincRNA gene	Chr5:119771936-119803970 (+)
CAST/EiJ	ENSTCUG00005042254	lncRNA gene	Chr5:119590947-119591083 (+)
CBA/J	ENSMUSG00210010513	lncRNA gene	Chr5:121032275-121064960 (+)
DBA/2J	ENSMUSG00185008482	lncRNA gene	Chr5:124096070-124129222 (+)
FVB/NJ	ENSMUSG00205047296	lncRNA gene	Chr5:119963485-119996163 (+)
JF1/MsJ	ENSUMUG00000053303	lncRNA gene	Chr5:126981942-127015019 (+)
LP/J	ENSMUSG00230048216	lncRNA gene	Chr5:128190217-128222812 (+)
NOD/ShiLtJ	ENSMUSG00190048273	lncRNA gene	Chr5:119979770-120012834 (+)
NZO/HlLtJ	ENSMUSG00225014580	lncRNA gene	Chr5:135889306-135922465 (+)
PWK/PhJ	ENSLUMG00010044584	lncRNA gene	Chr5:118853793-118886772 (+)
SPRET/EiJ	ENSMSPG00010033754	lncRNA gene	Chr5:122180981-122219596 (+)
WSB/EiJ	ENSIUOG00005020841	lncRNA gene	Chr5:122659063-122698341 (+)

Homology

• Gene Tree
  Gm40331
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40331
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  7

• Ensembl
  ENSMUSG00000106644 (Evidence)
• NCBI Gene
  105244779

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106644	Ensembl Gene Model | MGI Sequence Detail	116663	C57BL/6J
transcript	ENSMUST00000285433	Ensembl | MGI Sequence Detail	2486	Not Applicable

Other
Accession IDs

MGI:5663091

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17