Gm40323 Gene Detail

Summary

• Symbol
  Gm40323
• Name
  predicted gene, 40323
• Synonyms
  Gm42485

• Feature Type
  lncRNA gene
• IDs
  MGI:5623208
  NCBI Gene: 105244771
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:125438242-125448508 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  353 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623208	lncRNA gene	Chr5:125438237-125456621 (+)
129S1/SvImJ	ENSMUSG00200031676	lncRNA gene	Chr5:119164600-119173954 (+)
A/J	ENSMUSG00195012487	lncRNA gene	Chr5:118686303-118695654 (+)
AKR/J	ENSMUSG00220048336	lncRNA gene	Chr5:118194466-118203656 (+)
BALB/cJ	ENSMUSG00180040585	lncRNA gene	Chr5:118801151-118810501 (+)
C3H/HeJ	ENSMUSG00175034117	lncRNA gene	Chr5:120800555-120809740 (+)
C57BL/6NJ	ENSMUSG00215043815	lncRNA gene	Chr5:118849062-118858659 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006197	lincRNA gene	Chr5:118327800-118336861 (+)
CAST/EiJ	ENSTCUG00005042840	lncRNA gene	Chr5:118083832-118092809 (+)
CBA/J	ENSMUSG00210010581	lncRNA gene	Chr5:119551503-119560693 (+)
DBA/2J	ENSMUSG00185007914	lncRNA gene	Chr5:122602582-122611769 (+)
FVB/NJ	ENSMUSG00205047548	lncRNA gene	Chr5:118476826-118486432 (+)
JF1/MsJ	ENSUMUG00000051055	lncRNA gene	Chr5:125470238-125479211 (+)
LP/J	ENSMUSG00230048232	lncRNA gene	Chr5:126686399-126695751 (+)
NOD/ShiLtJ	ENSMUSG00190045021	lncRNA gene	Chr5:118476907-118486090 (+)
NZO/HlLtJ	ENSMUSG00225014599	lncRNA gene	Chr5:134386523-134395875 (+)
PWK/PhJ	ENSLUMG00010044090	lncRNA gene	Chr5:117368713-117377655 (+)
SPRET/EiJ	ENSMSPG00010047103	lncRNA gene	Chr5:120660821-120669877 (+)
WSB/EiJ	ENSIUOG00005020680	lncRNA gene	Chr5:121183249-121192645 (+)

Homology

• Gene Tree
  Gm40323
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm40323
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000104932 (Evidence)
• NCBI Gene
  105244771

Representative Sequences			Length	Strain/Species
genomic	105244771	NCBI Gene Model | MGI Sequence Detail	10267	C57BL/6J
transcript	XR_868513	RefSeq | MGI Sequence Detail	1248	C57BL/6J

Other
Accession IDs

MGI:5662622

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17