Gm40319 Pseudogene Detail

Summary

• Symbol
  Gm40319
• Name
  predicted gene, 40319

• Feature Type
  pseudogene
• IDs
  MGI:5623204
  NCBI Gene: 105244767
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:51209723-51210203 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623204	pseudogene	Chr5:51209723-51210203 (+)
129S1/SvImJ	ENSMUSG00200001596	pseudogene	Chr5:46731891-46732371 (+)
A/J	ENSMUSG00195015999	pseudogene	Chr5:46118934-46119414 (+)
AKR/J	ENSMUSG00220000793	pseudogene	Chr5:46188698-46189178 (+)
BALB/cJ	ENSMUSG00180006781	pseudogene	Chr5:45869917-45870397 (+)
C3H/HeJ	ENSMUSG00175015617	pseudogene	Chr5:47909116-47909596 (+)
C57BL/6NJ	ENSMUSG00215001795	pseudogene	Chr5:46683641-46684121 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011598	pseudogene	Chr5:45018506-45018985 (+)
CAST/EiJ	ENSTCUG00005003284	pseudogene	Chr5:46056590-46057070 (+)
CBA/J	ENSMUSG00210024689	pseudogene	Chr5:46869717-46870197 (+)
DBA/2J	ENSMUSG00185001771	pseudogene	Chr5:48748038-48748518 (+)
FVB/NJ	ENSMUSG00205003023	pseudogene	Chr5:45698268-45698748 (+)
JF1/MsJ	ENSUMUG00000000776	pseudogene	Chr5:53327194-53327674 (+)
LP/J	ENSMUSG00230011020	pseudogene	Chr5:53414114-53414594 (+)
NOD/ShiLtJ	ENSMUSG00190000879	pseudogene	Chr5:45827862-45828342 (+)
NZO/HlLtJ	ENSMUSG00225028784	pseudogene	Chr5:58541886-58542366 (+)
PWK/PhJ	ENSLUMG00010001587	pseudogene	Chr5:45985689-45986169 (+)
SPRET/EiJ	ENSMSPG00010013197	pseudogene	Chr5:47446213-47446482 (+)
WSB/EiJ	ENSIUOG00005019892	pseudogene	Chr5:48800540-48801020 (+)

Homology

• Gene Tree
  Gm40319
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm40319
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106267 (Evidence)
• NCBI Gene
  105244767

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106267	Ensembl Gene Model | MGI Sequence Detail	481	C57BL/6J
transcript	ENSMUST00000199785	Ensembl | MGI Sequence Detail	481	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm40319:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46164	Chr5:51209679-51209684 (+)	-41 bp