Gm40309 Gene Detail

Summary

• Symbol
  Gm40309
• Name
  predicted gene, 40309
• Synonyms
  Gm42724

• Feature Type
  lncRNA gene
• IDs
  MGI:5623194
  NCBI Gene: 105244756
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:65699272-65701023 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623194	lncRNA gene	Chr5:65694896-65721319 (+)
129S1/SvImJ	ENSMUSG00200035895	unclassified gene	Chr5:61316698-61318450 (+)
A/J	ENSMUSG00195033960	unclassified gene	Chr5:60687112-60688863 (+)
AKR/J	ENSMUSG00220004335	unclassified gene	Chr5:60828787-60830540 (+)
BALB/cJ	ENSMUSG00180006235	unclassified gene	Chr5:60472950-60474701 (+)
C3H/HeJ	ENSMUSG00175027570	unclassified gene	Chr5:62507115-62508866 (+)
C57BL/6NJ	ENSMUSG00215005772	unclassified gene	Chr5:61245565-61247317 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001353	unclassified gene	Chr5:58845239-58846918 (+)
CAST/EiJ	ENSTCUG00005000463	unclassified gene	Chr5:60395659-60397401 (+)
CBA/J	ENSMUSG00210023926	unclassified gene	Chr5:61420072-61421823 (+)
DBA/2J	ENSMUSG00185005803	unclassified gene	Chr5:63277573-63279324 (+)
FVB/NJ	ENSMUSG00205011898	unclassified gene	Chr5:60229511-60231263 (+)
JF1/MsJ	ENSUMUG00000022620	unclassified gene	Chr5:67755847-67757593 (+)
LP/J	ENSMUSG00230009325	unclassified gene	Chr5:67929444-67931195 (+)
NOD/ShiLtJ	ENSMUSG00190000688	unclassified gene	Chr5:60412163-60413914 (+)
NZO/HlLtJ	ENSMUSG00225010774	unclassified gene	Chr5:73056110-73057855 (+)
PWK/PhJ	ENSLUMG00010004282	unclassified gene	Chr5:60363351-60365098 (+)
SPRET/EiJ	ENSMSPG00010037084	unclassified gene	Chr5:62176661-62178407 (+)
WSB/EiJ	ENSIUOG00005018213	unclassified gene	Chr5:63368712-63370460 (+)

Homology

• Gene Tree
  Gm40309
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm40309
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107362 (Evidence)
• NCBI Gene
  105244756

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107362	Ensembl Gene Model | MGI Sequence Detail	1752	C57BL/6J
transcript	AK077237	GenBank | ENA | DDBJ | MGI Sequence Detail	1758	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662861

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm40309:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46475	Chr5:65697391-65697414 (+)	-1,869 bp
Tssr46476	Chr5:65699294-65699298 (+)	24 bp