Gm40292 Gene Detail

Summary

• Symbol
  Gm40292
• Name
  predicted gene, 40292
• Synonyms
  Gm43454

• Feature Type
  lncRNA gene
• IDs
  MGI:5623177
  NCBI Gene: 105244735
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:39464477-39470667 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  234 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623177	lncRNA gene	Chr5:39464437-39486239 (+)
129S1/SvImJ	ENSMUSG00200032525	lncRNA gene	Chr5:34916587-34922766 (+)
A/J	ENSMUSG00195030135	lncRNA gene	Chr5:34367716-34373889 (+)
AKR/J	ENSMUSG00220002509	lncRNA gene	Chr5:34396987-34403160 (+)
BALB/cJ	ENSMUSG00180025700	lncRNA gene	Chr5:34170474-34176643 (+)
C3H/HeJ	ENSMUSG00175020314	lncRNA gene	Chr5:36154528-36160697 (+)
C57BL/6NJ	ENSMUSG00215006608	lncRNA gene	Chr5:34916491-34922670 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006020	lincRNA gene	Chr5:34118886-34125286 (+)
CAST/EiJ	ENSTCUG00005024914	lncRNA gene	Chr5:34340711-34346804 (+)
CBA/J	ENSMUSG00210005443	lncRNA gene	Chr5:35116500-35122671 (+)
DBA/2J	ENSMUSG00185018270	lncRNA gene	Chr5:37000596-37006775 (+)
FVB/NJ	ENSMUSG00205022126	lncRNA gene	Chr5:33910779-33916954 (+)
JF1/MsJ	ENSUMUG00000002746	lncRNA gene	Chr5:41556000-41562107 (+)
LP/J	ENSMUSG00230003004	lncRNA gene	Chr5:41643513-41649690 (+)
NOD/ShiLtJ	ENSMUSG00190003259	lncRNA gene	Chr5:34189179-34195352 (+)
NZO/HlLtJ	ENSMUSG00225017826	lncRNA gene	Chr5:46804274-46810441 (+)
PWK/PhJ	ENSLUMG00010023830	lncRNA gene	Chr5:34217438-34223523 (+)
SPRET/EiJ	ENSMSPG00010037301	lncRNA gene	Chr5:35480541-35486671 (+)
WSB/EiJ	ENSIUOG00005019119	lncRNA gene	Chr5:37085644-37091769 (+)

Homology

• Gene Tree
  Gm40292
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm40292
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  3

• Ensembl
  ENSMUSG00000107031 (Evidence)
• NCBI Gene
  105244735

Representative Sequences			Length	Strain/Species
genomic	105244735	NCBI Gene Model | MGI Sequence Detail	6191	C57BL/6J
transcript	XR_003955904	RefSeq | MGI Sequence Detail	765	C57BL/6J

Other
Accession IDs

MGI:5663591

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm40292:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46064	Chr5:39464466-39464476 (+)	-6 bp