Gm40289 Gene Detail

Summary

• Symbol
  Gm40289
• Name
  predicted gene, 40289
• Synonyms
  Gm42505

• Feature Type
  lncRNA gene
• IDs
  MGI:5623174
  NCBI Gene: 105244731
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:38129262-38145082 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  545 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623174	lncRNA gene	Chr5:38129241-38145194 (+)
129S1/SvImJ	ENSMUSG00200032613	lncRNA gene	Chr5:33590973-33593350 (+)
A/J	ENSMUSG00195031058	lncRNA gene	Chr5:33052579-33054958 (+)
AKR/J	ENSMUSG00220002477	lncRNA gene	Chr5:33079371-33081750 (+)
BALB/cJ	ENSMUSG00180025262	lncRNA gene	Chr5:32855395-32857774 (+)
C3H/HeJ	ENSMUSG00175020398	lncRNA gene	Chr5:34839527-34841906 (+)
C57BL/6NJ	ENSMUSG00215006059	lncRNA gene	Chr5:33589512-33591889 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006017	lincRNA gene	Chr5:32848290-32850675 (+)
CAST/EiJ	ENSTCUG00005025212	lncRNA gene	Chr5:33055245-33057622 (+)
CBA/J	ENSMUSG00210005627	lncRNA gene	Chr5:33801507-33803886 (+)
DBA/2J	ENSMUSG00185018440	lncRNA gene	Chr5:35674985-35677362 (+)
FVB/NJ	ENSMUSG00205021684	lncRNA gene	Chr5:32557412-32559789 (+)
JF1/MsJ	ENSUMUG00000054748	lncRNA gene	Chr5:40257628-40259993 (+)
LP/J	ENSMUSG00230002581	lncRNA gene	Chr5:40318047-40320424 (+)
NOD/ShiLtJ	ENSMUSG00190003209	lncRNA gene	Chr5:32861973-32864350 (+)
NZO/HlLtJ	ENSMUSG00225017602	lncRNA gene	Chr5:45475259-45477636 (+)
PWK/PhJ	ENSLUMG00010023181	lncRNA gene	Chr5:32934731-32937108 (+)
SPRET/EiJ	ENSMSPG00010039724	lncRNA gene	Chr5:34176065-34178447 (+)
WSB/EiJ	ENSIUOG00005018537	lncRNA gene	Chr5:35762453-35764830 (+)

Homology

• Gene Tree
  Gm40289
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm40289
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  4

• Ensembl
  ENSMUSG00000107126 (Evidence)
• NCBI Gene
  105244731

Representative Sequences			Length	Strain/Species
genomic	105244731	NCBI Gene Model | MGI Sequence Detail	15821	C57BL/6J
transcript	AK030193	GenBank | ENA | DDBJ | MGI Sequence Detail	2271	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662642

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm40289:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46036	Chr5:38141029-38141038 (+)	11,772 bp
Tssr1468	Chr5:38141052-38141064 (+)	11,796 bp