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Gm40264 Gene Detail
Summary
  • Symbol
    Gm40264
  • Name
    predicted gene, 40264
  • Synonyms
    lnc-Crot
Location &
Maps
more
  • Sequence Map
    Chr5:9084746-9088592 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    293 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5623149
 lncRNA gene Chr5:9084746-9143394 (+)
129S1/SvImJ ENSMUSG00200002808
 lncRNA gene Chr5:5781927-5808249 (+)
A/J ENSMUSG00195012491
 lncRNA gene Chr5:5792677-5819219 (+)
AKR/J ENSMUSG00220002419
 lncRNA gene Chr5:5696540-5718862 (+)
BALB/cJ ENSMUSG00180017305
 lncRNA gene Chr5:5544804-5571342 (+)
C3H/HeJ ENSMUSG00175029168
 lncRNA gene Chr5:5720029-5748404 (+)
C57BL/6NJ ENSMUSG00215025837
 lncRNA gene Chr5:6001647-6028187 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005001826
 lncRNA gene Chr5:5888154-5907342 (+)
CBA/J ENSMUSG00210002849
 lncRNA gene Chr5:6086207-6112743 (+)
DBA/2J ENSMUSG00185029577
 lncRNA gene Chr5:6088397-6114933 (+)
FVB/NJ ENSMUSG00205008343
 lncRNA gene Chr5:5795787-5817619 (+)
JF1/MsJ ENSUMUG00000004027
 lncRNA gene Chr5:6130644-6149693 (+)
LP/J ENSMUSG00230003424
 lncRNA gene Chr5:10039347-10065667 (+)
NOD/ShiLtJ ENSMUSG00190013248
 lncRNA gene Chr5:5608532-5627595 (+)
NZO/HlLtJ ENSMUSG00225008791
 lncRNA gene Chr5:13774760-13801080 (+)
PWK/PhJ ENSLUMG00010019777
 lncRNA gene Chr5:6023491-6042569 (+)
SPRET/EiJ ENSMSPG00010005011
 lncRNA gene Chr5:5957956-5978480 (+)
WSB/EiJ ENSIUOG00005026631
 lncRNA gene Chr5:5802581-5828437 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • Tissues
    23
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    40
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 105244705 NCBI Gene Model | MGI Sequence Detail 3847 C57BL/6J ±  kb
transcript XR_868240 RefSeq | MGI Sequence Detail 573 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Primer pair 1
    Other 1
References
more
  • Summaries
    All 4
    Developmental Gene Expression 1
  • Earliest
    J:246283 Fan Z, et al., A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. Nucleic Acids Res. 2017 Jun 02;45(10):5720-5738
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory