Gm40190 Gene Detail

Summary

• Symbol
  Gm40190
• Name
  predicted gene, 40190

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5623075
  NCBI Gene: 105244600
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:122087088-122098831 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  470 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623075	lncRNA gene	Chr3:122086655-122098831 (+)
129S1/SvImJ	ENSMUSG00200027141	lncRNA gene	Chr3:118772743-118782959 (+)
A/J	ENSMUSG00195015817	lncRNA gene	Chr3:118990099-119000250 (+)
AKR/J	ENSMUSG00220025975	lncRNA gene	Chr3:117377103-117387252 (+)
BALB/cJ	ENSMUSG00180030046	lncRNA gene	Chr3:118926589-118936736 (+)
C3H/HeJ	ENSMUSG00175027011	lncRNA gene	Chr3:118473385-118483537 (+)
C57BL/6NJ	ENSMUSG00215008357	lncRNA gene	Chr3:119221589-119231761 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005721	lincRNA gene	Chr3:115808790-115819841 (+)
CAST/EiJ	ENSTCUG00005032484	lncRNA gene	Chr3:119496715-119507234 (+)
CBA/J	ENSMUSG00210003025	lncRNA gene	Chr3:119104313-119114462 (+)
DBA/2J	ENSMUSG00185008278	lncRNA gene	Chr3:119669220-119678703 (+)
FVB/NJ	ENSMUSG00205007651	lncRNA gene	Chr3:118041107-118051245 (+)
JF1/MsJ	ENSUMUG00000003237	lncRNA gene	Chr3:118474827-118484342 (+)
LP/J	ENSMUSG00230012020	lncRNA gene	Chr3:121623346-121633563 (+)
NOD/ShiLtJ	ENSMUSG00190034781	lncRNA gene	Chr3:120052168-120062308 (+)
NZO/HlLtJ	ENSMUSG00225003664	lncRNA gene	Chr3:124111090-124121230 (+)
PWK/PhJ	ENSLUMG00010009334	lncRNA gene	Chr3:118451854-118469210 (+)
SPRET/EiJ	ENSMSPG00010032349	lncRNA gene	Chr3:119201085-119213898 (+)
WSB/EiJ	ENSIUOG00005007187	lncRNA gene	Chr3:119272721-119282892 (+)

Homology

• Gene Tree
  Gm40190
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40190
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000105057 (Evidence)
• NCBI Gene
  105244600

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105057	Ensembl Gene Model | MGI Sequence Detail	11744	C57BL/6J
transcript	ENSMUST00000354875	Ensembl | MGI Sequence Detail	1580	Not Applicable
polypeptide	XP_036019404	RefSeq | MGI Sequence Detail	303	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm40190:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31493	Chr3:122087799-122087809 (+)	716 bp