Gm40124 Gene Detail

Summary

• Symbol
  Gm40124
• Name
  predicted gene, 40124

• Feature Type
  lncRNA gene
• IDs
  MGI:5623009
  NCBI Gene: 105244531
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:115430736-115435245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  254 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623009	lncRNA gene	Chr3:115430342-115435375 (-)
129S1/SvImJ	ENSMUSG00200026327	lncRNA gene	Chr3:112090732-112095298 (-)
A/J	ENSMUSG00195016525	lncRNA gene	Chr3:112339121-112343623 (-)
AKR/J	ENSMUSG00220032932	lncRNA gene	Chr3:110746447-110750949 (-)
BALB/cJ	ENSMUSG00180029646	lncRNA gene	Chr3:112283807-112288309 (-)
C3H/HeJ	ENSMUSG00175026714	lncRNA gene	Chr3:111824381-111828883 (-)
C57BL/6NJ	ENSMUSG00215007562	lncRNA gene	Chr3:112555415-112559917 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027539	lncRNA gene	Chr3:112823396-112828244 (-)
CBA/J	ENSMUSG00210002969	lncRNA gene	Chr3:112433155-112437657 (-)
DBA/2J	ENSMUSG00185008491	lncRNA gene	Chr3:113023230-113027732 (-)
FVB/NJ	ENSMUSG00205030457	lncRNA gene	Chr3:111372112-111376614 (-)
JF1/MsJ	ENSUMUG00000005277	lncRNA gene	Chr3:111918235-111922784 (-)
LP/J	ENSMUSG00230012527	lncRNA gene	Chr3:114951634-114956200 (-)
NOD/ShiLtJ	ENSMUSG00190033192	lncRNA gene	Chr3:113372355-113376919 (-)
NZO/HlLtJ	ENSMUSG00225003975	lncRNA gene	Chr3:117445624-117450126 (-)
PWK/PhJ	ENSLUMG00010025494	lncRNA gene	Chr3:111801241-111805739 (-)
SPRET/EiJ	ENSMSPG00010030705	lncRNA gene	Chr3:112421513-112427911 (-)
WSB/EiJ	ENSIUOG00005006981	lncRNA gene	Chr3:112580924-112585424 (-)

Homology

• Gene Tree
  Gm40124
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40124
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000120078 (Evidence)
• NCBI Gene
  105244531

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120078	Ensembl Gene Model | MGI Sequence Detail	4510	C57BL/6J
transcript	ENSMUST00000241256	Ensembl | MGI Sequence Detail	2357	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40124:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35265	Chr3:115435192-115435203 (-)	47 bp
Tssr35264	Chr3:115435159-115435180 (-)	75 bp