Gm40117 Gene Detail

Summary

• Symbol
  Gm40117
• Name
  predicted gene, 40117
• Synonyms
  Gm42956

• Feature Type
  lncRNA gene
• IDs
  MGI:5623002
  NCBI Gene: 118568635
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:104897686-104911556 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  378 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623002	lncRNA gene	Chr3:104875335-104927965 (+)
129S1/SvImJ	ENSMUSG00200036201	lncRNA gene	Chr3:101499146-101509118 (+)
A/J	ENSMUSG00195025611	lncRNA gene	Chr3:101927633-101937614 (+)
AKR/J	ENSMUSG00220042361	lncRNA gene	Chr3:100285097-100295069 (+)
BALB/cJ	ENSMUSG00180020572	lncRNA gene	Chr3:101859794-101869769 (+)
C3H/HeJ	ENSMUSG00175031247	lncRNA gene	Chr3:101407990-101417967 (+)
C57BL/6NJ	ENSMUSG00215033013	lncRNA gene	Chr3:102172341-102182316 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003421	antisense lncRNA gene	Chr3:99033851-99043713 (+)
CAST/EiJ	ENSTCUG00005020380	lncRNA gene	Chr3:102124407-102134410 (+)
CBA/J	ENSMUSG00210008956	lncRNA gene	Chr3:102029959-102039940 (+)
DBA/2J	ENSMUSG00185022244	lncRNA gene	Chr3:102508209-102518184 (+)
FVB/NJ	ENSMUSG00205029633	lncRNA gene	Chr3:101083691-101093663 (+)
JF1/MsJ	ENSUMUG00000049285	lncRNA gene	Chr3:101238528-101248549 (+)
LP/J	ENSMUSG00230019699	lncRNA gene	Chr3:104427064-104437036 (+)
NOD/ShiLtJ	ENSMUSG00190037745	lncRNA gene	Chr3:102711744-102721717 (+)
NZO/HlLtJ	ENSMUSG00225020789	lncRNA gene	Chr3:106895334-106905356 (+)
PWK/PhJ	ENSLUMG00010031864	lncRNA gene	Chr3:101322200-101332173 (+)
SPRET/EiJ	ENSMSPG00010035170	lncRNA gene	Chr3:101498319-101508388 (+)
WSB/EiJ	ENSIUOG00005004955	lncRNA gene	Chr3:102047303-102057283 (+)

Homology

• Gene Tree
  Gm40117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40117
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  1

• Ensembl
  ENSMUSG00000105355 (Evidence)
• NCBI Gene
  118568635

Representative Sequences			Length	Strain/Species
genomic	118568635	NCBI Gene Model | MGI Sequence Detail	13871	C57BL/6J
transcript	XR_004941626	RefSeq | MGI Sequence Detail	4266	C57BL/6J

Other
Accession IDs

MGI:5663093

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;