Gm40020 Pseudogene Detail

Summary

• Symbol
  Gm40020
• Name
  predicted gene, 40020

• Feature Type
  pseudogene
• IDs
  MGI:5622905
  NCBI Gene: 105244407
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:85729254-85730888 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622905	pseudogene	Chr2:85729254-85730888 (-)
129S1/SvImJ	ENSMUSG00200053853	pseudogene	Chr2:82750271-82751905 (-)
A/J	ENSMUSG00195053335	pseudogene	Chr2:82833773-82835968 (-)
AKR/J	ENSMUSG00220053129	pseudogene	Chr2:82712515-82714710 (-)
BALB/cJ	ENSMUSG00180054839	pseudogene	Chr2:82761527-82763722 (-)
C3H/HeJ	ENSMUSG00175054057	pseudogene	Chr2:82899572-82901767 (-)
C57BL/6NJ	ENSMUSG00215053755	pseudogene	Chr2:82835389-82837023 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052840	pseudogene	Chr2:82262770-82265062 (-)
CBA/J	ENSMUSG00210040461	pseudogene	Chr2:82927471-82929666 (-)
DBA/2J	ENSMUSG00185057124	pseudogene	Chr2:82757740-82759935 (-)
FVB/NJ	ENSMUSG00205052424	pseudogene	Chr2:82140919-82143114 (-)
JF1/MsJ	ENSUMUG00000035736	pseudogene	Chr2:82689739-82691863 (-)
LP/J	ENSMUSG00230045842	pseudogene	Chr2:84508778-84510973 (-)
NOD/ShiLtJ	ENSMUSG00190051467	pseudogene	Chr2:82823461-82825656 (-)
NZO/HlLtJ	ENSMUSG00225053765	pseudogene	Chr2:92418539-92420734 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005053382	pseudogene	Chr2:82761062-82763354 (-)

Homology

• Gene Tree
  Gm40020
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40020
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000111834 (Evidence)
• NCBI Gene
  105244407

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111834	Ensembl Gene Model | MGI Sequence Detail	1635	C57BL/6J
transcript	ENSMUST00000215677	Ensembl | MGI Sequence Detail	1635	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;