Gm40003 Gene Detail

Summary

• Symbol
  Gm40003
• Name
  predicted gene, 40003

• Feature Type
  lncRNA gene
• IDs
  MGI:5622888
  NCBI Gene: 105244384
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:170512874-170515762 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622888	lncRNA gene	Chr2:170494890-170515796 (-)
129S1/SvImJ	ENSMUSG00200041008	lncRNA gene	Chr2:167421768-167424676 (-)
A/J	ENSMUSG00195026270	lncRNA gene	Chr2:167766592-167769498 (-)
AKR/J	ENSMUSG00220035942	lncRNA gene	Chr2:167065943-167068851 (-)
BALB/cJ	ENSMUSG00180040944	lncRNA gene	Chr2:167213016-167215924 (-)
C3H/HeJ	ENSMUSG00175041758	lncRNA gene	Chr2:167985506-167988414 (-)
C57BL/6NJ	ENSMUSG00215035859	lncRNA gene	Chr2:167396134-167399044 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009084	lncRNA gene	Chr2:166307427-166310435 (-)
CBA/J	ENSMUSG00210042881	lncRNA gene	Chr2:167893164-167896072 (-)
DBA/2J	ENSMUSG00185026881	lncRNA gene	Chr2:167607042-167609950 (-)
FVB/NJ	ENSMUSG00205026496	lncRNA gene	Chr2:166641021-166643931 (-)
JF1/MsJ	ENSUMUG00000043306	lncRNA gene	Chr2:167303463-167305456 (-)
LP/J	ENSMUSG00230012852	lncRNA gene	Chr2:169182194-169185102 (-)
NOD/ShiLtJ	ENSMUSG00190042219	lncRNA gene	Chr2:167300235-167303143 (-)
NZO/HlLtJ	ENSMUSG00225003773	lncRNA gene	Chr2:177169297-177172205 (-)
PWK/PhJ	ENSLUMG00010039865	lncRNA gene	Chr2:167190556-167192587 (-)
SPRET/EiJ	ENSMSPG00010029368	lncRNA gene	Chr2:169932537-169933176 (-)
WSB/EiJ	ENSIUOG00005025752	lncRNA gene	Chr2:167011164-167014068 (-)

Homology

• Gene Tree
  Gm40003
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120109 (Evidence)
• NCBI Gene
  105244384

Representative Sequences			Length	Strain/Species
genomic	105244384	NCBI Gene Model | MGI Sequence Detail	2889	C57BL/6J
transcript	NR_176468	RefSeq | MGI Sequence Detail	554	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40003:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27933	Chr2:170515720-170515734 (-)	35 bp