Gm39993 Gene Detail

Summary

• Symbol
  Gm39993
• Name
  predicted gene, 39993

• Feature Type
  lncRNA gene
• IDs
  MGI:5622878
  NCBI Gene: 105244371
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:168798102-168800173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622878	lncRNA gene	Chr2:168798003-168800173 (+)
129S1/SvImJ	ENSMUSG00200040941	lncRNA gene	Chr2:165698741-165700760 (+)
A/J	ENSMUSG00195025584	lncRNA gene	Chr2:166042506-166044524 (+)
AKR/J	ENSMUSG00220037638	lncRNA gene	Chr2:165344394-165346413 (+)
BALB/cJ	ENSMUSG00180039858	lncRNA gene	Chr2:165490591-165492610 (+)
C3H/HeJ	ENSMUSG00175045241	lncRNA gene	Chr2:166262381-166264400 (+)
C57BL/6NJ	ENSMUSG00215030768	lncRNA gene	Chr2:165676790-165678804 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009551	lncRNA gene	Chr2:164574849-164576859 (+)
CBA/J	ENSMUSG00210044900	lncRNA gene	Chr2:166170786-166172804 (+)
DBA/2J	ENSMUSG00185027464	lncRNA gene	Chr2:165884577-165886597 (+)
FVB/NJ	ENSMUSG00205032581	lncRNA gene	Chr2:164917294-164919312 (+)
JF1/MsJ	ENSUMUG00000042573	lncRNA gene	Chr2:165544618-165546632 (+)
LP/J	ENSMUSG00230012836	lncRNA gene	Chr2:167459401-167461420 (+)
NOD/ShiLtJ	ENSMUSG00190045820	lncRNA gene	Chr2:165575734-165577753 (+)
NZO/HlLtJ	ENSMUSG00225003750	lncRNA gene	Chr2:175448860-175450874 (+)
PWK/PhJ	ENSLUMG00010039007	lncRNA gene	Chr2:165429477-165431491 (+)
SPRET/EiJ	ENSMSPG00010032921	lncRNA gene	Chr2:168182752-168184774 (+)
WSB/EiJ	ENSIUOG00005027338	lncRNA gene	Chr2:165277669-165279688 (+)

Homology

• Gene Tree
  Gm39993
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  17
• Gene trapped
  17
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000120283 (Evidence)
• NCBI Gene
  105244371

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120283	Ensembl Gene Model | MGI Sequence Detail	2072	C57BL/6J
transcript	ENSMUST00000277440	Ensembl | MGI Sequence Detail	2025	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39993:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21884	Chr2:168798152-168798176 (+)	62 bp