Gm39858 Gene Detail

Summary

• Symbol
  Gm39858
• Name
  predicted gene, 39858

• Feature Type
  lncRNA gene
• IDs
  MGI:5622743
  NCBI Gene: 105244209
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:75464359-75464719 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622743	lncRNA gene	Chr2:75464300-75467706 (+)
129S1/SvImJ	ENSMUSG00200004272	lncRNA gene	Chr2:72510602-72511350 (+)
A/J	ENSMUSG00195019804	lncRNA gene	Chr2:72657421-72658169 (+)
AKR/J	ENSMUSG00220002358	lncRNA gene	Chr2:72622219-72622967 (+)
BALB/cJ	ENSMUSG00180006955	lncRNA gene	Chr2:72611095-72611843 (+)
C3H/HeJ	ENSMUSG00175011090	lncRNA gene	Chr2:72734392-72735140 (+)
C57BL/6NJ	ENSMUSG00215029827	lncRNA gene	Chr2:72576634-72577382 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031054	lncRNA gene	Chr2:72054628-72055361 (+)
CBA/J	ENSMUSG00210002495	lncRNA gene	Chr2:72775444-72776192 (+)
DBA/2J	ENSMUSG00185011805	lncRNA gene	Chr2:72611276-72612024 (+)
FVB/NJ	ENSMUSG00205018782	lncRNA gene	Chr2:72067556-72068304 (+)
JF1/MsJ	ENSUMUG00000044300	lncRNA gene	Chr2:72313026-72313728 (+)
LP/J	ENSMUSG00230026640	lncRNA gene	Chr2:74415704-74416452 (+)
NOD/ShiLtJ	ENSMUSG00190011007	lncRNA gene	Chr2:72686599-72687347 (+)
NZO/HlLtJ	ENSMUSG00225003536	lncRNA gene	Chr2:82180468-82181216 (+)
PWK/PhJ	ENSLUMG00010033318	lncRNA gene	Chr2:72541420-72542122 (+)
SPRET/EiJ	ENSMSPG00010023649	lncRNA gene	Chr2:73926456-73927194 (+)
WSB/EiJ	ENSIUOG00005011452	lncRNA gene	Chr2:72733933-72734681 (+)

Homology

• Gene Tree
  Gm39858
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm39858
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000121212 (Evidence)
• NCBI Gene
  105244209

Representative Sequences			Length	Strain/Species
genomic	105244209	NCBI Gene Model | MGI Sequence Detail	361	C57BL/6J
transcript	XR_866472	RefSeq | MGI Sequence Detail	284	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm39858:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18453	Chr2:75464317-75464349 (+)	-26 bp
Tssr18454	Chr2:75464355-75464386 (+)	12 bp
Tssr18455	Chr2:75464400-75464411 (+)	47 bp