Gm39816 Gene Detail

Summary

• Symbol
  Gm39816
• Name
  predicted gene, 39816

• Feature Type
  lncRNA gene
• IDs
  MGI:5622701
  NCBI Gene: 105244154
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:45551622-45643774 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2449 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622701	lncRNA gene	Chr11:45511193-45644480 (-)
129S1/SvImJ	ENSMUSG00200040321	lncRNA gene	Chr11:42586870-42706954 (-)
A/J	ENSMUSG00195037635	lncRNA gene	Chr11:42533639-42653727 (-)
AKR/J	ENSMUSG00220041117	lncRNA gene	Chr11:42724801-42844865 (-)
BALB/cJ	ENSMUSG00180037427	lncRNA gene	Chr11:42523449-42643551 (-)
C3H/HeJ	ENSMUSG00175039989	lncRNA gene	Chr11:42527113-42647196 (-)
C57BL/6NJ	ENSMUSG00215037225	lncRNA gene	Chr11:42452841-42586108 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044505	lncRNA gene	Chr11:42264016-42394705 (-)
CBA/J	ENSMUSG00210030460	lncRNA gene	Chr11:42417011-42537096 (-)
DBA/2J	ENSMUSG00185028074	lncRNA gene	Chr11:42593023-42713195 (-)
FVB/NJ	ENSMUSG00205039563	lncRNA gene	Chr11:42527003-42647155 (-)
JF1/MsJ	ENSUMUG00000042908	lncRNA gene	Chr11:42856548-42994454 (-)
LP/J	ENSMUSG00230034746	lncRNA gene	Chr11:43743453-43863526 (-)
NOD/ShiLtJ	ENSMUSG00190042478	lncRNA gene	Chr11:42640449-42760507 (-)
NZO/HlLtJ	ENSMUSG00225036504	lncRNA gene	Chr11:45693951-45814359 (-)
PWK/PhJ	ENSLUMG00010035964	lncRNA gene	Chr11:42416076-42552872 (-)
SPRET/EiJ	ENSMSPG00010020233	lncRNA gene	Chr11:43042343-43165542 (-)
WSB/EiJ	ENSIUOG00005041585	lncRNA gene	Chr11:42422938-42543083 (-)

Homology

• Gene Tree
  Gm39816
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39816
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4

• Ensembl
  ENSMUSG00000120703 (Evidence)
• NCBI Gene
  105244154

Representative Sequences			Length	Strain/Species
genomic	105244154	NCBI Gene Model | MGI Sequence Detail	92153	C57BL/6J
transcript	XR_879813	RefSeq | MGI Sequence Detail	739	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm39816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107574	Chr11:45644436-45644441 (-)	-665 bp
Tssr107573	Chr11:45643770-45643803 (-)	-13 bp