Gm39792 Gene Detail

Summary

• Symbol
  Gm39792
• Name
  predicted gene, 39792

• Feature Type
  lncRNA gene
• IDs
  MGI:5622677
  NCBI Gene: 105244123
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:33788129-33803675 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  533 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622677	lncRNA gene	Chr2:33788129-33803783 (-)
129S1/SvImJ	ENSMUSG00200048883	lncRNA gene	Chr2:30760638-30776263 (-)
A/J	ENSMUSG00195041413	lncRNA gene	Chr2:30863569-30879183 (-)
AKR/J	ENSMUSG00220044947	lncRNA gene	Chr2:30981614-30997219 (-)
BALB/cJ	ENSMUSG00180048943	lncRNA gene	Chr2:30876982-30892597 (-)
C3H/HeJ	ENSMUSG00175045957	lncRNA gene	Chr2:30843351-30858974 (-)
C57BL/6NJ	ENSMUSG00215047268	lncRNA gene	Chr2:30908842-30924465 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018141	lncRNA gene	Chr2:30589745-30605402 (-)
CBA/J	ENSMUSG00210049925	lncRNA gene	Chr2:30915804-30931425 (-)
DBA/2J	ENSMUSG00185048938	lncRNA gene	Chr2:30776651-30792271 (-)
FVB/NJ	ENSMUSG00205039020	lncRNA gene	Chr2:30623081-30638695 (-)
JF1/MsJ	ENSUMUG00000014335	lncRNA gene	Chr2:30670945-30686864 (-)
LP/J	ENSMUSG00230046761	lncRNA gene	Chr2:32696098-32711721 (-)
NOD/ShiLtJ	ENSMUSG00190043082	lncRNA gene	Chr2:30877993-30893609 (-)
NZO/HlLtJ	ENSMUSG00225050138	lncRNA gene	Chr2:40449306-40464880 (-)
PWK/PhJ	ENSLUMG00010045711	lncRNA gene	Chr2:30769370-30785306 (-)
SPRET/EiJ	ENSMSPG00010042379	lncRNA gene	Chr2:31476969-31492832 (-)
WSB/EiJ	ENSIUOG00005042916	lncRNA gene	Chr2:30733715-30749343 (-)

Homology

• Gene Tree
  Gm39792
  

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000121186 (Evidence)
• NCBI Gene
  105244123

Representative Sequences			Length	Strain/Species
genomic	105244123	NCBI Gene Model | MGI Sequence Detail	15547	C57BL/6J
transcript	XR_866139	RefSeq | MGI Sequence Detail	1124	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39792:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23623	Chr2:33803720-33803751 (-)	-61 bp