Gm39770 Gene Detail

Summary

• Symbol
  Gm39770
• Name
  predicted gene, 39770

• Feature Type
  lncRNA gene
• IDs
  MGI:5622655
  NCBI Gene: 105244096
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:24960388-24962685 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622655	lncRNA gene	Chr2:24954635-24970566 (-)
129S1/SvImJ	ENSMUSG00200053354	lncRNA gene	Chr2:21944513-21954356 (-)
A/J	ENSMUSG00195050450	lncRNA gene	Chr2:22034982-22044822 (-)
AKR/J	ENSMUSG00220053571	lncRNA gene	Chr2:22152822-22162661 (-)
BALB/cJ	ENSMUSG00180054299	lncRNA gene	Chr2:22046152-22056001 (-)
C3H/HeJ	ENSMUSG00175053737	lncRNA gene	Chr2:22010338-22020189 (-)
C57BL/6NJ	ENSMUSG00215049836	lncRNA gene	Chr2:22069036-22078880 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053372	lncRNA gene	Chr2:21789326-21799659 (-)
CBA/J	ENSMUSG00210017855	lncRNA gene	Chr2:22049314-22059173 (-)
DBA/2J	ENSMUSG00185052924	lncRNA gene	Chr2:21949259-21959095 (-)
FVB/NJ	ENSMUSG00205050979	lncRNA gene	Chr2:21803264-21813090 (-)
JF1/MsJ	ENSUMUG00000056032	lncRNA gene	Chr2:21863992-21874346 (-)
LP/J	ENSMUSG00230046295	lncRNA gene	Chr2:23880515-23890366 (-)
NOD/ShiLtJ	ENSMUSG00190053162	lncRNA gene	Chr2:22040824-22050663 (-)
NZO/HlLtJ	ENSMUSG00225011446	lncRNA gene	Chr2:31631179-31641026 (-)
PWK/PhJ	ENSLUMG00010052497	lncRNA gene	Chr2:21958933-21969063 (-)
SPRET/EiJ	ENSMSPG00010047785	lncRNA gene	Chr2:22647233-22657676 (-)
WSB/EiJ	ENSIUOG00005052966	lncRNA gene	Chr2:21906189-21916038 (-)

Homology

• Gene Tree
  Gm39770
  

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000121260 (Evidence)
• NCBI Gene
  105244096

Representative Sequences			Length	Strain/Species
genomic	105244096	NCBI Gene Model | MGI Sequence Detail	2298	C57BL/6J
transcript	XR_866037	RefSeq | MGI Sequence Detail	535	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;