Gm39662 Gene Detail

Summary

• Symbol
  Gm39662
• Name
  predicted gene, 39662
• Synonyms
  Gm45835

• Feature Type
  lncRNA gene
• IDs
  MGI:5622547
  NCBI Gene: 105243955
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:72680304-72682437 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622547	lncRNA gene	Chr1:72679963-72682437 (+)
129S1/SvImJ	ENSMUSG00200004967	lncRNA gene	Chr1:70342672-70344447 (+)
A/J	ENSMUSG00195032369	lncRNA gene	Chr1:69756528-69758303 (+)
AKR/J	ENSMUSG00220039180	lncRNA gene	Chr1:69908788-69910563 (+)
BALB/cJ	ENSMUSG00180032981	lncRNA gene	Chr1:70021181-70022956 (+)
C3H/HeJ	ENSMUSG00175000931	lncRNA gene	Chr1:70151844-70153619 (+)
C57BL/6NJ	ENSMUSG00215026233	lncRNA gene	Chr1:70067001-70068776 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021975	lncRNA gene	Chr1:69816141-69817914 (+)
CBA/J	ENSMUSG00210003300	lncRNA gene	Chr1:69849191-69850966 (+)
DBA/2J	ENSMUSG00185005283	lncRNA gene	Chr1:70939700-70941475 (+)
FVB/NJ	ENSMUSG00205015378	lncRNA gene	Chr1:69575802-69577577 (+)
JF1/MsJ	ENSUMUG00000004209	lncRNA gene	Chr1:69852198-69853973 (+)
LP/J	ENSMUSG00230002962	lncRNA gene	Chr1:70933931-70935706 (+)
NOD/ShiLtJ	ENSMUSG00190014531	lncRNA gene	Chr1:70066002-70067777 (+)
NZO/HlLtJ	ENSMUSG00225040668	lncRNA gene	Chr1:74149045-74150820 (+)
PWK/PhJ	ENSLUMG00010007796	lncRNA gene	Chr1:69443129-69444905 (+)
SPRET/EiJ	ENSMSPG00010019649	lncRNA gene	Chr1:71524123-71526376 (+)
WSB/EiJ	ENSIUOG00005029096	lncRNA gene	Chr1:69710923-69712698 (+)

Homology

• Gene Tree
  Gm39662
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm39662
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000110712 (Evidence)
• NCBI Gene
  105243955

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110712	Ensembl Gene Model | MGI Sequence Detail	2134	C57BL/6J
transcript	ENSMUST00000347137	Ensembl | MGI Sequence Detail	1609	Not Applicable

Other
Accession IDs

MGI:5804950

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14