Gm39606 Gene Detail

Summary

• Symbol
  Gm39606
• Name
  predicted gene, 39606

• Feature Type
  lncRNA gene
• IDs
  MGI:5622491
  NCBI Gene: 105243881
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:20403059-20404112 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622491	lncRNA gene	Chr11:20403059-20406035 (+)
129S1/SvImJ	ENSMUSG00200022698	lncRNA gene	Chr11:17415382-17416381 (+)
A/J	ENSMUSG00195005364	lncRNA gene	Chr11:17272828-17273840 (+)
AKR/J	ENSMUSG00220003574	lncRNA gene	Chr11:17350157-17351156 (+)
BALB/cJ	ENSMUSG00180004145	lncRNA gene	Chr11:17261829-17262841 (+)
C3H/HeJ	ENSMUSG00175008319	lncRNA gene	Chr11:17281219-17282218 (+)
C57BL/6NJ	ENSMUSG00215003599	lncRNA gene	Chr11:17344461-17345460 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007565	lncRNA gene	Chr11:17226776-17227777 (+)
CBA/J	ENSMUSG00210009325	lncRNA gene	Chr11:17265518-17266508 (+)
DBA/2J	ENSMUSG00185011854	lncRNA gene	Chr11:17372672-17373671 (+)
FVB/NJ	ENSMUSG00205004961	lncRNA gene	Chr11:17324746-17325745 (+)
JF1/MsJ	ENSUMUG00000005792	lncRNA gene	Chr11:17575767-17576782 (+)
LP/J	ENSMUSG00230004236	lncRNA gene	Chr11:18412064-18413076 (+)
NOD/ShiLtJ	ENSMUSG00190008865	lncRNA gene	Chr11:17395369-17396368 (+)
NZO/HlLtJ	ENSMUSG00225021954	lncRNA gene	Chr11:20435313-20436312 (+)
PWK/PhJ	ENSLUMG00010012164	lncRNA gene	Chr11:17232987-17234002 (+)
SPRET/EiJ	ENSMSPG00010018925	lncRNA gene	Chr11:17495868-17496852 (+)
WSB/EiJ	ENSIUOG00005010433	lncRNA gene	Chr11:17314145-17315135 (+)

Homology

• Gene Tree
  Gm39606
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39606
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000121213 (Evidence)
• NCBI Gene
  105243881

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121213	Ensembl Gene Model | MGI Sequence Detail	1054	C57BL/6J
transcript	ENSMUST00000247465	Ensembl | MGI Sequence Detail	892	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm39606:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100503	Chr11:20403099-20403114 (+)	48 bp