Gm39529 Gene Detail

Summary

• Symbol
  Gm39529
• Name
  predicted gene, 39529

• Feature Type
  lncRNA gene
• IDs
  MGI:5622414
  NCBI Gene: 105243712
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:102067702-102070871 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622414	lncRNA gene	ChrX:102067627-102070874 (-)
129S1/SvImJ	ENSMUSG00200039594	lncRNA gene	ChrX:83819585-83822832 (-)
A/J	ENSMUSG00195042927	lncRNA gene	ChrX:87574387-87577635 (-)
AKR/J	ENSMUSG00220039676	lncRNA gene	ChrX:82248128-82251374 (-)
BALB/cJ	ENSMUSG00180044441	lncRNA gene	ChrX:84251715-84254963 (-)
C3H/HeJ	ENSMUSG00175044778	lncRNA gene	ChrX:87824582-87827828 (-)
C57BL/6NJ	ENSMUSG00215046214	lncRNA gene	ChrX:84438810-84442056 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043891	lncRNA gene	ChrX:85311504-85315715 (-)
CBA/J	ENSMUSG00210044644	lncRNA gene	ChrX:84715393-84718639 (-)
DBA/2J	ENSMUSG00185044822	lncRNA gene	ChrX:97160684-97163928 (-)
FVB/NJ	ENSMUSG00205039755	lncRNA gene	ChrX:83807993-83811237 (-)
JF1/MsJ	ENSUMUG00000041954	lncRNA gene	ChrX:117793584-117796818 (+)
LP/J	ENSMUSG00230042775	lncRNA gene	ChrX:103852972-103856217 (-)
NOD/ShiLtJ	ENSMUSG00190045189	lncRNA gene	ChrX:83872611-83875855 (-)
NZO/HlLtJ	ENSMUSG00225046016	lncRNA gene	ChrX:108980389-108983635 (-)
PWK/PhJ	ENSLUMG00010041358	lncRNA gene	ChrX:83109092-83112318 (+)
SPRET/EiJ	ENSMSPG00010043437	lncRNA gene	ChrX:87319110-87322333 (+)
WSB/EiJ	ENSIUOG00005042377	lncRNA gene	ChrX:84384347-84387593 (-)

Homology

• Gene Tree
  Gm39529
  

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000120909 (Evidence)
• NCBI Gene
  105243712

Representative Sequences			Length	Strain/Species
genomic	105243712	NCBI Gene Model | MGI Sequence Detail	3170	C57BL/6J
transcript	NR_166892	RefSeq | MGI Sequence Detail	1988	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39529:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163924	ChrX:102070865-102070873 (-)	2 bp