Gm39526 Gene Detail

Summary

• Symbol
  Gm39526
• Name
  predicted gene, 39526
• Synonyms
  Gm44592

• Feature Type
  lncRNA gene
• IDs
  MGI:5622411
  NCBI Gene: 105243704
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:93777758-93790519 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  309 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622411	lncRNA gene	ChrX:93775005-93790519 (+)
129S1/SvImJ	ENSMUSG00200038690	lncRNA gene	ChrX:75548115-75562075 (+)
A/J	ENSMUSG00195032935	lncRNA gene	ChrX:79390881-79404845 (-)
AKR/J	ENSMUSG00220030088	lncRNA gene	ChrX:74122296-74136259 (-)
BALB/cJ	ENSMUSG00180023292	lncRNA gene	ChrX:76029729-76043693 (-)
C3H/HeJ	ENSMUSG00175019424	lncRNA gene	ChrX:79752938-79766900 (-)
C57BL/6NJ	ENSMUSG00215021654	lncRNA gene	ChrX:76229717-76243678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029224	lncRNA gene	ChrX:77241266-77255259 (+)
CBA/J	ENSMUSG00210036348	lncRNA gene	ChrX:76462974-76476933 (-)
DBA/2J	ENSMUSG00185033038	lncRNA gene	ChrX:88695361-88709321 (+)
FVB/NJ	ENSMUSG00205025929	lncRNA gene	ChrX:75759618-75773580 (-)
JF1/MsJ	ENSUMUG00000023472	lncRNA gene	ChrX:109533061-109547048 (+)
LP/J	ENSMUSG00230014149	lncRNA gene	ChrX:95393493-95407453 (+)
NOD/ShiLtJ	ENSMUSG00190018292	lncRNA gene	ChrX:75592764-75606724 (+)
NZO/HlLtJ	ENSMUSG00225045764	lncRNA gene	ChrX:100583655-100597615 (-)
PWK/PhJ	ENSLUMG00010040070	lncRNA gene	ChrX:74871767-74885748 (+)
SPRET/EiJ	ENSMSPG00010034142	lncRNA gene	ChrX:79003971-79018106 (-)
WSB/EiJ	ENSIUOG00005042449	lncRNA gene	ChrX:76260651-76274615 (+)

Homology

• Gene Tree
  Gm39526
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000109459 (Evidence)
• NCBI Gene
  105243704

Representative Sequences			Length	Strain/Species
genomic	105243704	NCBI Gene Model | MGI Sequence Detail	12762	C57BL/6J
transcript	NR_168266	RefSeq | MGI Sequence Detail	5974	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753168

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;