Gm39500 Pseudogene Detail

Summary

• Symbol
  Gm39500
• Name
  predicted gene, 39500

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5622385
  NCBI Gene: 105243669
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:20645055-20649322 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622385	pseudogene	ChrX:20641700-20649440 (+)
129S1/SvImJ	ENSMUSG00200015750	pseudogene	ChrX:15408917-15413181 (+)
A/J	ENSMUSG00195007542	pseudogene	ChrX:15409953-15414222 (+)
AKR/J	ENSMUSG00220018197	pseudogene	ChrX:14904754-14909021 (+)
BALB/cJ	ENSMUSG00180023140	pseudogene	ChrX:15343616-15347885 (+)
C3H/HeJ	ENSMUSG00175030744	pseudogene	ChrX:15384228-15388495 (+)
C57BL/6NJ	ENSMUSG00215021277	pseudogene	ChrX:15988235-15992502 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027447	pseudogene	ChrX:15316738-15317749 (+)
CBA/J	ENSMUSG00210020865	pseudogene	ChrX:15440800-15445067 (+)
DBA/2J	ENSMUSG00185031939	pseudogene	ChrX:22041399-22045666 (+)
FVB/NJ	ENSMUSG00205026244	pseudogene	ChrX:14984991-14989258 (+)
JF1/MsJ	ENSUMUG00000029563	pseudogene	ChrX:35863672-35867906 (+)
LP/J	ENSMUSG00230006709	pseudogene	ChrX:26610679-26614946 (+)
NOD/ShiLtJ	ENSMUSG00190029880	pseudogene	ChrX:15387299-15391566 (+)
NZO/HlLtJ	ENSMUSG00225041354	pseudogene	ChrX:31850586-31854853 (+)
PWK/PhJ	ENSLUMG00010016580	pseudogene	ChrX:15268997-15273227 (+)
SPRET/EiJ	ENSMSPG00010011231	pseudogene	ChrX:16539672-16542130 (+)
WSB/EiJ	ENSIUOG00005033426	pseudogene	ChrX:11989777-11993740 (+)

Homology

• Gene Tree
  Gm39500
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000118509 (Evidence)
• NCBI Gene
  105243669

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118509	Ensembl Gene Model | MGI Sequence Detail	4268	C57BL/6J
transcript	ENSMUST00000238979	Ensembl | MGI Sequence Detail	353	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;